RNA–Protein interactions for RNA: ENST00000400814.3

PRAMEF1-202, Transcript of PRAME family member 1, humanhuman

TSL 1 (best)

Gene PRAMEF1, Length 1,327 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAMEF1-202ENST00000400814 CPDO75976 1380 aa12.62□□□□□ -0.39
PRAMEF1-202ENST00000400814 TMEM88BA6NKF7 163 aa12.62□□□□□ -0.39
PRAMEF1-202ENST00000400814 ATP9BO43861 1147 aa12.62□□□□□ -0.39
PRAMEF1-202ENST00000400814 PBX2P40425 430 aa12.62□□□□□ -0.39
PRAMEF1-202ENST00000400814 PDE3BQ13370 1112 aa12.62□□□□□ -0.39
PRAMEF1-202ENST00000400814 TCP11L2Q8N4U5 519 aa12.62□□□□□ -0.39
PRAMEF1-202ENST00000400814 NBPF3Q9H094 633 aa12.62□□□□□ -0.39
PRAMEF1-202ENST00000400814 SENP3-EIF4A1A0A087X0R7 540 aa12.61□□□□□ -0.39
PRAMEF1-202ENST00000400814 ZFRQ96KR1 1074 aaKnown RBP12.61□□□□□ -0.39
PRAMEF1-202ENST00000400814 IGSF1Q8N6C5 1336 aa12.6□□□□□ -0.39
PRAMEF1-202ENST00000400814 BHMG1C9JSJ3 638 aaPredicted RBP12.6□□□□□ -0.39
PRAMEF1-202ENST00000400814 UBAP1LF5GYI3 381 aa12.6□□□□□ -0.39
PRAMEF1-202ENST00000400814 HMOX1P09601 288 aa12.6□□□□□ -0.39
PRAMEF1-202ENST00000400814 ZC3H6P61129 1189 aaKnown RBP12.6□□□□□ -0.39
PRAMEF1-202ENST00000400814 CCDC27Q2M243 656 aa12.6□□□□□ -0.39
PRAMEF1-202ENST00000400814 SALL2Q9Y467 1007 aaPredicted RBP12.6□□□□□ -0.39
PRAMEF1-202ENST00000400814 COL18A1P39060 1754 aa12.59□□□□□ -0.39
PRAMEF1-202ENST00000400814 KDRP35968 1356 aa12.59□□□□□ -0.39
PRAMEF1-202ENST00000400814 PRKAR2BP31323 418 aa12.59□□□□□ -0.39
PRAMEF1-202ENST00000400814 TMPOP42166 694 aaKnown RBP12.59□□□□□ -0.39
PRAMEF1-202ENST00000400814 FOXD4L5Q5VV16 416 aaPredicted RBP12.59□□□□□ -0.39
PRAMEF1-202ENST00000400814 SULT6B1Q6IMI4 303 aa12.59□□□□□ -0.39
PRAMEF1-202ENST00000400814 FOXD4L4Q8WXT5 416 aaPredicted RBP12.59□□□□□ -0.39
PRAMEF1-202ENST00000400814 ABCC6O95255 1503 aa12.58□□□□□ -0.4
PRAMEF1-202ENST00000400814 PHACTR3Q96KR7 559 aa12.58□□□□□ -0.4
PRAMEF1-202ENST00000400814 IVNS1ABPQ9Y6Y0 642 aa12.58□□□□□ -0.4
PRAMEF1-202ENST00000400814 FBXO45P0C2W1 286 aa12.57□□□□□ -0.4
PRAMEF1-202ENST00000400814 PIP4K2BP78356 416 aa12.57□□□□□ -0.4
PRAMEF1-202ENST00000400814 MAPK8IP3Q9UPT6 1336 aa12.57□□□□□ -0.4
PRAMEF1-202ENST00000400814 COL16A1Q07092 1604 aaPredicted RBP12.56□□□□□ -0.4
PRAMEF1-202ENST00000400814 COL22A1Q8NFW1 1626 aaPredicted RBP12.56□□□□□ -0.4
PRAMEF1-202ENST00000400814 PHLPP1O60346 1717 aa12.56□□□□□ -0.4
PRAMEF1-202ENST00000400814 ZBBXA8MT70 800 aa12.56□□□□□ -0.4
PRAMEF1-202ENST00000400814 NEFMP07197 916 aa12.56□□□□□ -0.4
PRAMEF1-202ENST00000400814 NBPF6Q5VWK0 638 aa12.56□□□□□ -0.4
PRAMEF1-202ENST00000400814 RNF19BQ6ZMZ0 732 aa12.56□□□□□ -0.4
PRAMEF1-202ENST00000400814 WDR63Q8IWG1 891 aa12.56□□□□□ -0.4
PRAMEF1-202ENST00000400814 TRMT2AQ8IZ69 625 aaKnown RBP12.56□□□□□ -0.4
PRAMEF1-202ENST00000400814 ANKRD24Q8TF21 1146 aa12.56□□□□□ -0.4
PRAMEF1-202ENST00000400814 LTV1Q96GA3 475 aaPredicted RBP12.56□□□□□ -0.4
PRAMEF1-202ENST00000400814 NBPF4Q96M43 638 aa12.56□□□□□ -0.4
PRAMEF1-202ENST00000400814 FKBPLQ9UIM3 349 aa12.56□□□□□ -0.4
PRAMEF1-202ENST00000400814 KIAA0232Q92628 1395 aa12.55□□□□□ -0.4
PRAMEF1-202ENST00000400814 ABCA3Q99758 1704 aa12.55□□□□□ -0.4
PRAMEF1-202ENST00000400814 NCAPD2Q15021 1401 aa12.55□□□□□ -0.4
PRAMEF1-202ENST00000400814 NFE2L2Q16236 605 aa12.55□□□□□ -0.4
PRAMEF1-202ENST00000400814 BLOC1S3Q6QNY0 202 aa12.55□□□□□ -0.4
PRAMEF1-202ENST00000400814 USB1Q9BQ65 265 aaKnown RBP12.55□□□□□ -0.4
PRAMEF1-202ENST00000400814 RRP7AQ9Y3A4 280 aaKnown RBP12.55□□□□□ -0.4
PRAMEF1-202ENST00000400814 RGPD5Q99666 1765 aa12.55□□□□□ -0.4
PRAMEF1-202ENST00000400814 RIPK4P57078 832 aa12.54□□□□□ -0.4
PRAMEF1-202ENST00000400814 SLFN5Q08AF3 891 aa12.54□□□□□ -0.4
PRAMEF1-202ENST00000400814 CHRNA2Q15822 529 aa12.54□□□□□ -0.4
PRAMEF1-202ENST00000400814 LRCH3Q96II8 777 aa12.54□□□□□ -0.4
PRAMEF1-202ENST00000400814 FAM83GA6ND36 823 aa12.53□□□□□ -0.4
PRAMEF1-202ENST00000400814 PIK3CDO00329 1044 aa12.53□□□□□ -0.4
PRAMEF1-202ENST00000400814 ELOAQ14241 798 aaKnown RBP12.53□□□□□ -0.4
PRAMEF1-202ENST00000400814 BRICD5Q6PL45 260 aa12.53□□□□□ -0.4
PRAMEF1-202ENST00000400814 ZNF687Q8N1G0 1237 aa12.53□□□□□ -0.4
PRAMEF1-202ENST00000400814 PRR14Q9BWN1 585 aa12.53□□□□□ -0.4
PRAMEF1-202ENST00000400814 PRDM11Q9NQV5 511 aa12.53□□□□□ -0.4
PRAMEF1-202ENST00000400814 CAMTA1Q9Y6Y1 1673 aa12.53□□□□□ -0.4
PRAMEF1-202ENST00000400814 MRPL50Q8N5N7 158 aaKnown RBP12.52□□□□□ -0.41
PRAMEF1-202ENST00000400814 NFATC2IPQ8NCF5 419 aa12.52□□□□□ -0.41
PRAMEF1-202ENST00000400814 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.52□□□□□ -0.41
PRAMEF1-202ENST00000400814 LMO7Q8WWI1 1683 aa12.52□□□□□ -0.41
PRAMEF1-202ENST00000400814 RGPD2P0DJD1 1756 aa12.52□□□□□ -0.41
PRAMEF1-202ENST00000400814 E9PSI1 815 aa12.51□□□□□ -0.41
PRAMEF1-202ENST00000400814 TK2O00142 265 aa12.51□□□□□ -0.41
PRAMEF1-202ENST00000400814 F12P00748 615 aaPredicted RBP12.51□□□□□ -0.41
PRAMEF1-202ENST00000400814 DUSP27Q5VZP5 1158 aa12.51□□□□□ -0.41
PRAMEF1-202ENST00000400814 IL16Q14005 1332 aa12.5□□□□□ -0.41
PRAMEF1-202ENST00000400814 ZC3H4Q9UPT8 1303 aaKnown RBP12.5□□□□□ -0.41
PRAMEF1-202ENST00000400814 MTHFSDQ2M296 383 aaKnown RBP12.5□□□□□ -0.41
PRAMEF1-202ENST00000400814 USHBP1Q8N6Y0 703 aa12.5□□□□□ -0.41
PRAMEF1-202ENST00000400814 LMOD3Q0VAK6 560 aa12.49□□□□□ -0.41
PRAMEF1-202ENST00000400814 SND1Q7KZF4 910 aaKnown RBP eCLIP12.49□□□□□ -0.41
PRAMEF1-202ENST00000400814 GAS2L2Q8NHY3 880 aa12.49□□□□□ -0.41
PRAMEF1-202ENST00000400814 DLG5Q8TDM6 1919 aa12.49□□□□□ -0.41
PRAMEF1-202ENST00000400814 WDR17Q8IZU2 1322 aa12.48□□□□□ -0.41
PRAMEF1-202ENST00000400814 FAM208AQ9UK61 1670 aaKnown RBP12.48□□□□□ -0.41
PRAMEF1-202ENST00000400814 HTATSF1O43719 755 aaKnown RBP12.48□□□□□ -0.41
PRAMEF1-202ENST00000400814 SKIP12755 728 aa12.48□□□□□ -0.41
PRAMEF1-202ENST00000400814 RBM25P49756 843 aaKnown RBP12.48□□□□□ -0.41
PRAMEF1-202ENST00000400814 B4GALNT3Q6L9W6 998 aa12.48□□□□□ -0.41
PRAMEF1-202ENST00000400814 ZNF428Q96B54 188 aa12.48□□□□□ -0.41
PRAMEF1-202ENST00000400814 OTUD5Q96G74 571 aa12.48□□□□□ -0.41
PRAMEF1-202ENST00000400814 ZMIZ1Q9ULJ6 1067 aa12.48□□□□□ -0.41
PRAMEF1-202ENST00000400814 PLEKHG2Q9H7P9 1386 aa12.47□□□□□ -0.41
PRAMEF1-202ENST00000400814 USP17L3A6NCW0 530 aa12.47□□□□□ -0.41
PRAMEF1-202ENST00000400814 USP17L4A6NCW7 530 aa12.47□□□□□ -0.41
PRAMEF1-202ENST00000400814 FMNL1O95466 1100 aaPredicted RBP12.47□□□□□ -0.41
PRAMEF1-202ENST00000400814 JUNDP17535 347 aa12.47□□□□□ -0.41
PRAMEF1-202ENST00000400814 PTPRNQ16849 979 aa12.47□□□□□ -0.41
PRAMEF1-202ENST00000400814 USP17L2Q6R6M4 530 aa12.47□□□□□ -0.41
PRAMEF1-202ENST00000400814 USP17L1Q7RTZ2 530 aa12.47□□□□□ -0.41
PRAMEF1-202ENST00000400814 PLEKHM2Q8IWE5 1019 aa12.47□□□□□ -0.41
PRAMEF1-202ENST00000400814 SCUBE3Q8IX30 993 aa12.47□□□□□ -0.41
PRAMEF1-202ENST00000400814 THAP11Q96EK4 314 aa12.47□□□□□ -0.41
PRAMEF1-202ENST00000400814 NLRP2Q9NX02 1062 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms