RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 NFXL1Q6ZNB6 911 aa11.01□□□□□ -0.65
SMAD9-203ENST00000399275 PPP1R1BQ9UD71 204 aaPredicted RBP11.01□□□□□ -0.65
SMAD9-203ENST00000399275 MAGI1Q96QZ7 1491 aaPredicted RBP11.01□□□□□ -0.65
SMAD9-203ENST00000399275 CHMP2AO43633 222 aa11.01□□□□□ -0.65
SMAD9-203ENST00000399275 ATP11AP98196 1134 aa11.01□□□□□ -0.65
SMAD9-203ENST00000399275 RAB3IL1Q8TBN0 382 aa11.01□□□□□ -0.65
SMAD9-203ENST00000399275 UIMC1Q96RL1 719 aa11.01□□□□□ -0.65
SMAD9-203ENST00000399275 JRKLQ9Y4A0 524 aa11.01□□□□□ -0.65
SMAD9-203ENST00000399275 MXRA7P84157 204 aa11.01□□□□□ -0.65
SMAD9-203ENST00000399275 MLECQ14165 292 aa11.01□□□□□ -0.65
SMAD9-203ENST00000399275 PTPRCP08575 1304 aa11□□□□□ -0.65
SMAD9-203ENST00000399275 PSMC4P43686 418 aa11□□□□□ -0.65
SMAD9-203ENST00000399275 CTAGE6Q86UF2 777 aa11□□□□□ -0.65
SMAD9-203ENST00000399275 LRRC43Q8N309 656 aa11□□□□□ -0.65
SMAD9-203ENST00000399275 GBP5Q96PP8 586 aa11□□□□□ -0.65
SMAD9-203ENST00000399275 ZSCAN22P10073 491 aaPredicted RBP11□□□□□ -0.65
SMAD9-203ENST00000399275 ARHGAP25P42331 645 aa11□□□□□ -0.65
SMAD9-203ENST00000399275 AEBP2Q6ZN18 517 aaPredicted RBP11□□□□□ -0.65
SMAD9-203ENST00000399275 FAM200AQ8TCP9 573 aa11□□□□□ -0.65
SMAD9-203ENST00000399275 CWC27Q6UX04 472 aaKnown RBP11□□□□□ -0.65
SMAD9-203ENST00000399275 RBSNQ9H1K0 784 aa11□□□□□ -0.65
SMAD9-203ENST00000399275 MKRN1Q9UHC7 482 aaKnown RBP11□□□□□ -0.65
SMAD9-203ENST00000399275 FAM135AQ9P2D6 1515 aa11□□□□□ -0.65
SMAD9-203ENST00000399275 PLB1Q6P1J6 1458 aa11□□□□□ -0.65
SMAD9-203ENST00000399275 COL17A1Q9UMD9 1497 aaPredicted RBP11□□□□□ -0.65
SMAD9-203ENST00000399275 SMARCA5O60264 1052 aaPredicted RBP11□□□□□ -0.65
SMAD9-203ENST00000399275 STX1AQ16623 288 aa11□□□□□ -0.65
SMAD9-203ENST00000399275 INF2Q27J81 1249 aa11□□□□□ -0.65
SMAD9-203ENST00000399275 ZSWIM4Q9H7M6 989 aa11□□□□□ -0.65
SMAD9-203ENST00000399275 CWC25Q9NXE8 425 aaPredicted RBP11□□□□□ -0.65
SMAD9-203ENST00000399275 PHACTR2O75167 634 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 STK3Q13188 491 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 SOGA3Q5TF21 947 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 ZBTB9Q96C00 473 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 CETN3O15182 167 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 SMIM24O75264 130 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 EIF5P55010 431 aaKnown RBP10.99□□□□□ -0.65
SMAD9-203ENST00000399275 HLTFQ14527 1009 aaKnown RBP eCLIP10.99□□□□□ -0.65
SMAD9-203ENST00000399275 USP48Q86UV5 1035 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 CCDC150Q8NCX0 1101 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 INTS4Q96HW7 963 aaKnown RBP10.99□□□□□ -0.65
SMAD9-203ENST00000399275 ZNF830Q96NB3 372 aaPredicted RBP10.99□□□□□ -0.65
SMAD9-203ENST00000399275 LOC102724159A0A0B4J2E5 919 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 PWP2Q15269 919 aaKnown RBP10.99□□□□□ -0.65
SMAD9-203ENST00000399275 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.99□□□□□ -0.65
SMAD9-203ENST00000399275 CTNNBL1Q8WYA6 563 aaPredicted RBP10.99□□□□□ -0.65
SMAD9-203ENST00000399275 GDPD2Q9HCC8 539 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 SPATA31E1Q6ZUB1 1445 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 ERICH2A1L162 156 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 ZEB2O60315 1214 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 WWC2Q6AWC2 1192 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 PIBF1Q8WXW3 757 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 NAA15Q9BXJ9 866 aaKnown RBP10.99□□□□□ -0.65
SMAD9-203ENST00000399275 CASQ2O14958 399 aaPredicted RBP10.99□□□□□ -0.65
SMAD9-203ENST00000399275 GLRX3O76003 335 aaKnown RBP10.99□□□□□ -0.65
SMAD9-203ENST00000399275 KIF1BPQ96EK5 621 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 EID1Q9Y6B2 187 aa10.99□□□□□ -0.65
SMAD9-203ENST00000399275 ITSN2Q9NZM3 1697 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 ICE2Q659A1 982 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 NPC1L1Q9UHC9 1359 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 ARHGEF11O15085 1522 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 XBP1P17861 261 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 WDR78Q5VTH9 848 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 ARMC9Q7Z3E5 817 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 CPLX4Q7Z7G2 160 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 FAM177BA6PVY3 158 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 KDM4AO75164 1064 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 MAP4K4O95819 1239 aaPredicted RBP10.98□□□□□ -0.65
SMAD9-203ENST00000399275 ZNF165P49910 485 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 CEP85LQ5SZL2 805 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 FAM76AQ8TAV0 307 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 TBC1D31Q96DN5 1066 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 TTC12Q9H892 705 aaPredicted RBP10.98□□□□□ -0.65
SMAD9-203ENST00000399275 CSB-PGBD3P0DP91 1061 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 SETDB1Q15047 1291 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 CCDC40Q4G0X9 1142 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 VCX3BQ9H321 246 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 EXOC6BQ9Y2D4 811 aa10.98□□□□□ -0.65
SMAD9-203ENST00000399275 GBP1P32455 592 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 FLIIQ13045 1269 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 USO1O60763 962 aaKnown RBP10.97□□□□□ -0.65
SMAD9-203ENST00000399275 SDSP20132 328 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 GJB2P29033 226 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 PRAM1Q96QH2 718 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 MKL2Q9ULH7 1088 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 GNG11P61952 73 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 NEDD9Q14511 834 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 IFT74Q96LB3 600 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 TESK2Q96S53 571 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 FRMD3A2A2Y4 597 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 PPFIA2O75334 1257 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 DESP17661 470 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 CKAP2LQ8IYA6 745 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 ARFGAP2Q8N6H7 521 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 CDK19Q9BWU1 502 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 ZBTB40Q9NUA8 1239 aa10.97□□□□□ -0.65
SMAD9-203ENST00000399275 GMNNO75496 209 aa10.96□□□□□ -0.65
SMAD9-203ENST00000399275 TOP1P11387 765 aaKnown RBP10.96□□□□□ -0.65
SMAD9-203ENST00000399275 SPTY2D1Q68D10 685 aaPredicted RBP10.96□□□□□ -0.65
SMAD9-203ENST00000399275 RUFY3Q7L099 469 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms