RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 LMNB1P20700 586 aa18.75■□□□□ 0.59
SEC13-208ENST00000397109 GOLGA2Q08379 1002 aa18.75■□□□□ 0.59
SEC13-208ENST00000397109 TWISTNBQ3B726 338 aaPredicted RBP18.75■□□□□ 0.59
SEC13-208ENST00000397109 CRY2Q49AN0 593 aa18.75■□□□□ 0.59
SEC13-208ENST00000397109 SLX4Q8IY92 1834 aa18.75■□□□□ 0.59
SEC13-208ENST00000397109 SLC10A5Q5PT55 438 aa18.74■□□□□ 0.59
SEC13-208ENST00000397109 NLRP3Q96P20 1036 aa18.74■□□□□ 0.59
SEC13-208ENST00000397109 STK31Q9BXU1 1019 aa18.74■□□□□ 0.59
SEC13-208ENST00000397109 ZNF219Q9P2Y4 722 aaPredicted RBP18.74■□□□□ 0.59
SEC13-208ENST00000397109 ANKRD36CQ5JPF3 1778 aa18.74■□□□□ 0.59
SEC13-208ENST00000397109 SBF1O95248 1867 aa18.74■□□□□ 0.59
SEC13-208ENST00000397109 RASSF7Q02833 373 aa18.73■□□□□ 0.59
SEC13-208ENST00000397109 RIC3Q7Z5B4 369 aa18.73■□□□□ 0.59
SEC13-208ENST00000397109 RPGRQ92834 1020 aaKnown RBP18.73■□□□□ 0.59
SEC13-208ENST00000397109 ARFGEF2Q9Y6D5 1785 aa18.73■□□□□ 0.59
SEC13-208ENST00000397109 FANCIQ9NVI1 1328 aa18.72■□□□□ 0.59
SEC13-208ENST00000397109 ZC3H4Q9UPT8 1303 aaKnown RBP18.72■□□□□ 0.59
SEC13-208ENST00000397109 NFKBIEO00221 500 aa18.72■□□□□ 0.59
SEC13-208ENST00000397109 DDX58O95786 925 aaKnown RBP18.72■□□□□ 0.59
SEC13-208ENST00000397109 HOXA10P31260 410 aaPredicted RBP18.72■□□□□ 0.59
SEC13-208ENST00000397109 TRIM28Q13263 835 aaKnown RBP18.72■□□□□ 0.59
SEC13-208ENST00000397109 ZNF526Q8TF50 670 aaPredicted RBP18.72■□□□□ 0.59
SEC13-208ENST00000397109 C7orf43Q8WVR3 580 aa18.72■□□□□ 0.59
SEC13-208ENST00000397109 ISCA1Q9BUE6 129 aa18.72■□□□□ 0.59
SEC13-208ENST00000397109 PHAXQ9H814 394 aaKnown RBP18.72■□□□□ 0.59
SEC13-208ENST00000397109 TRMT112Q9UI30 125 aaKnown RBP18.72■□□□□ 0.59
SEC13-208ENST00000397109 SH3TC1Q8TE82 1336 aa18.72■□□□□ 0.59
SEC13-208ENST00000397109 LTBP3Q9NS15 1303 aa18.72■□□□□ 0.59
SEC13-208ENST00000397109 RBM17Q96I25 401 aaKnown RBP18.71■□□□□ 0.59
SEC13-208ENST00000397109 MYH16Q9H6N6 1097 aa18.71■□□□□ 0.59
SEC13-208ENST00000397109 CACNA1SQ13698 1873 aa18.71■□□□□ 0.59
SEC13-208ENST00000397109 CCDC93Q567U6 631 aa18.71■□□□□ 0.59
SEC13-208ENST00000397109 CRAMP1Q96RY5 1269 aa18.71■□□□□ 0.59
SEC13-208ENST00000397109 FER1L6Q2WGJ9 1857 aa18.7■□□□□ 0.58
SEC13-208ENST00000397109 YTHDC1Q96MU7 727 aaKnown RBP18.7■□□□□ 0.58
SEC13-208ENST00000397109 TAOK3Q9H2K8 898 aa18.7■□□□□ 0.58
SEC13-208ENST00000397109 TNRC6CQ9HCJ0 1690 aaKnown RBP18.69■□□□□ 0.58
SEC13-208ENST00000397109 ATP5J2-PTCD1G3V325 749 aa18.69■□□□□ 0.58
SEC13-208ENST00000397109 CC2D2BQ6DHV5 1058 aa18.69■□□□□ 0.58
SEC13-208ENST00000397109 RTKN2Q8IZC4 609 aa18.69■□□□□ 0.58
SEC13-208ENST00000397109 CCDC88AQ3V6T2 1871 aa18.67■□□□□ 0.58
SEC13-208ENST00000397109 KDM2BQ8NHM5 1336 aa18.67■□□□□ 0.58
SEC13-208ENST00000397109 SLC4A2P04920 1241 aa18.67■□□□□ 0.58
SEC13-208ENST00000397109 HCLS1P14317 486 aaPredicted RBP18.67■□□□□ 0.58
SEC13-208ENST00000397109 PRELPP51888 382 aa18.67■□□□□ 0.58
SEC13-208ENST00000397109 C1QTNF8P60827 252 aa18.67■□□□□ 0.58
SEC13-208ENST00000397109 EXOSC9Q06265 439 aaKnown RBP18.67■□□□□ 0.58
SEC13-208ENST00000397109 GRIPAP1Q4V328 841 aa18.67■□□□□ 0.58
SEC13-208ENST00000397109 CACNA1FO60840 1977 aa18.67■□□□□ 0.58
SEC13-208ENST00000397109 ZNF521Q96K83 1311 aa18.67■□□□□ 0.58
SEC13-208ENST00000397109 VAMP4O75379 141 aa18.66■□□□□ 0.58
SEC13-208ENST00000397109 KSR2Q6VAB6 950 aa18.66■□□□□ 0.58
SEC13-208ENST00000397109 C3orf67Q6ZVT6 689 aa18.66■□□□□ 0.58
SEC13-208ENST00000397109 CCDC191Q8NCU4 936 aa18.66■□□□□ 0.58
SEC13-208ENST00000397109 MYD88Q99836 296 aa18.66■□□□□ 0.58
SEC13-208ENST00000397109 METTL22Q9BUU2 404 aaPredicted RBP18.66■□□□□ 0.58
SEC13-208ENST00000397109 SPINK5Q9NQ38 1064 aaPredicted RBP18.66■□□□□ 0.58
SEC13-208ENST00000397109 TCERG1O14776 1098 aaKnown RBP18.65■□□□□ 0.58
SEC13-208ENST00000397109 HSP90B1P14625 803 aaKnown RBP18.65■□□□□ 0.58
SEC13-208ENST00000397109 FKBP4Q02790 459 aaKnown RBP eCLIP18.65■□□□□ 0.58
SEC13-208ENST00000397109 SYNE4Q8N205 404 aa18.65■□□□□ 0.58
SEC13-208ENST00000397109 FAM89AQ96GI7 184 aa18.65■□□□□ 0.58
SEC13-208ENST00000397109 TMX4Q9H1E5 349 aaPredicted RBP18.65■□□□□ 0.58
SEC13-208ENST00000397109 MAP3K2Q9Y2U5 619 aa18.65■□□□□ 0.58
SEC13-208ENST00000397109 PI4KAP2A4QPH2 592 aa18.64■□□□□ 0.57
SEC13-208ENST00000397109 NEXNQ0ZGT2 675 aa18.64■□□□□ 0.57
SEC13-208ENST00000397109 DDX46Q7L014 1031 aaKnown RBP18.64■□□□□ 0.57
SEC13-208ENST00000397109 PI4KAP1Q8N8J0 262 aa18.64■□□□□ 0.57
SEC13-208ENST00000397109 ZBTB38Q8NAP3 1195 aaPredicted RBP18.64■□□□□ 0.57
SEC13-208ENST00000397109 DICER1Q9UPY3 1922 aaKnown RBP18.64■□□□□ 0.57
SEC13-208ENST00000397109 GLTPD2A6NH11 291 aa18.63■□□□□ 0.57
SEC13-208ENST00000397109 KIF3CO14782 793 aa18.63■□□□□ 0.57
SEC13-208ENST00000397109 PPEF1O14829 653 aaPredicted RBP18.63■□□□□ 0.57
SEC13-208ENST00000397109 BBOX1O75936 387 aa18.63■□□□□ 0.57
SEC13-208ENST00000397109 DPY19L2Q6NUT2 758 aa18.63■□□□□ 0.57
SEC13-208ENST00000397109 CWC25Q9NXE8 425 aaPredicted RBP18.63■□□□□ 0.57
SEC13-208ENST00000397109 IRS4O14654 1257 aaPredicted RBP18.62■□□□□ 0.57
SEC13-208ENST00000397109 FLIIQ13045 1269 aa18.62■□□□□ 0.57
SEC13-208ENST00000397109 OLFM4Q6UX06 510 aa18.62■□□□□ 0.57
SEC13-208ENST00000397109 G2E3Q7L622 706 aa18.62■□□□□ 0.57
SEC13-208ENST00000397109 PSMD1Q99460 953 aa18.62■□□□□ 0.57
SEC13-208ENST00000397109 ABCC4O15439 1325 aa18.62■□□□□ 0.57
SEC13-208ENST00000397109 E9PSI1 815 aa18.61■□□□□ 0.57
SEC13-208ENST00000397109 PCCAP05165 728 aaPredicted RBP18.61■□□□□ 0.57
SEC13-208ENST00000397109 SF3B3Q15393 1217 aaKnown RBP18.61■□□□□ 0.57
SEC13-208ENST00000397109 ZNF428Q96B54 188 aa18.61■□□□□ 0.57
SEC13-208ENST00000397109 NMRK2Q9NPI5 230 aa18.61■□□□□ 0.57
SEC13-208ENST00000397109 GRAPQ13588 217 aa18.6■□□□□ 0.57
SEC13-208ENST00000397109 RTL5Q5HYW3 569 aaPredicted RBP18.6■□□□□ 0.57
SEC13-208ENST00000397109 TMC4Q7Z404 712 aa18.6■□□□□ 0.57
SEC13-208ENST00000397109 GRAPLQ8TC17 118 aaPredicted RBP18.6■□□□□ 0.57
SEC13-208ENST00000397109 ATP6V0A2Q9Y487 856 aa18.6■□□□□ 0.57
SEC13-208ENST00000397109 LAMB2P55268 1798 aa18.6■□□□□ 0.57
SEC13-208ENST00000397109 FKBP5Q13451 457 aaPredicted RBP18.59■□□□□ 0.57
SEC13-208ENST00000397109 ZNF277Q9NRM2 450 aaPredicted RBP18.59■□□□□ 0.57
SEC13-208ENST00000397109 TIAM2Q8IVF5 1701 aa18.59■□□□□ 0.57
SEC13-208ENST00000397109 SP8Q8IXZ3 490 aa18.58■□□□□ 0.57
SEC13-208ENST00000397109 C16orf71Q8IYS4 520 aaPredicted RBP18.58■□□□□ 0.57
SEC13-208ENST00000397109 DDX60Q8IY21 1712 aaKnown RBP18.58■□□□□ 0.56
SEC13-208ENST00000397109 SNED1Q8TER0 1413 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms