RNA–Protein interactions for RNA: ENST00000394892.2

ATG4A-205, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-205ENST00000394892 HOXA10P31260 410 aaPredicted RBP11.58□□□□□ -0.56
ATG4A-205ENST00000394892 ZEB1P37275 1124 aaPredicted RBP11.58□□□□□ -0.56
ATG4A-205ENST00000394892 AIMP1Q12904 312 aaKnown RBP11.58□□□□□ -0.56
ATG4A-205ENST00000394892 MAPK8IP2Q13387 824 aaPredicted RBP11.58□□□□□ -0.56
ATG4A-205ENST00000394892 DUSP27Q5VZP5 1158 aa11.58□□□□□ -0.56
ATG4A-205ENST00000394892 C8orf58Q8NAV2 365 aa11.58□□□□□ -0.56
ATG4A-205ENST00000394892 ZNF428Q96B54 188 aa11.58□□□□□ -0.56
ATG4A-205ENST00000394892 IBTKQ9P2D0 1353 aaPredicted RBP11.57□□□□□ -0.56
ATG4A-205ENST00000394892 SLC10A5Q5PT55 438 aa11.57□□□□□ -0.56
ATG4A-205ENST00000394892 NLRP10Q86W26 655 aa11.57□□□□□ -0.56
ATG4A-205ENST00000394892 HOXB7P09629 217 aa11.56□□□□□ -0.56
ATG4A-205ENST00000394892 TCIRG1Q13488 830 aa11.56□□□□□ -0.56
ATG4A-205ENST00000394892 RIC1Q4ADV7 1423 aa11.56□□□□□ -0.56
ATG4A-205ENST00000394892 HDGFL1Q5TGJ6 251 aa11.56□□□□□ -0.56
ATG4A-205ENST00000394892 TSPYL6Q8N831 410 aa11.56□□□□□ -0.56
ATG4A-205ENST00000394892 NYXQ9GZU5 481 aa11.56□□□□□ -0.56
ATG4A-205ENST00000394892 TAOK3Q9H2K8 898 aa11.56□□□□□ -0.56
ATG4A-205ENST00000394892 ZNF277Q9NRM2 450 aaPredicted RBP11.56□□□□□ -0.56
ATG4A-205ENST00000394892 IFT57Q9NWB7 429 aa11.56□□□□□ -0.56
ATG4A-205ENST00000394892 SBF1O95248 1867 aa11.55□□□□□ -0.56
ATG4A-205ENST00000394892 ELL2O00472 640 aaPredicted RBP11.55□□□□□ -0.56
ATG4A-205ENST00000394892 HSPA1AP0DMV8 641 aaKnown RBP11.55□□□□□ -0.56
ATG4A-205ENST00000394892 HSPA1BP0DMV9 641 aaKnown RBP11.55□□□□□ -0.56
ATG4A-205ENST00000394892 HCLS1P14317 486 aaPredicted RBP11.55□□□□□ -0.56
ATG4A-205ENST00000394892 PARP10Q53GL7 1025 aa11.55□□□□□ -0.56
ATG4A-205ENST00000394892 ISCA1Q9BUE6 129 aa11.55□□□□□ -0.56
ATG4A-205ENST00000394892 PHAXQ9H814 394 aaKnown RBP11.55□□□□□ -0.56
ATG4A-205ENST00000394892 COL4A5P29400 1685 aa11.55□□□□□ -0.56
ATG4A-205ENST00000394892 DDNO94850 711 aaPredicted RBP11.54□□□□□ -0.56
ATG4A-205ENST00000394892 GTF2E1P29083 439 aaPredicted RBP11.54□□□□□ -0.56
ATG4A-205ENST00000394892 FKBP4Q02790 459 aaKnown RBP eCLIP11.54□□□□□ -0.56
ATG4A-205ENST00000394892 CCDC93Q567U6 631 aa11.54□□□□□ -0.56
ATG4A-205ENST00000394892 SOGA3Q5TF21 947 aa11.54□□□□□ -0.56
ATG4A-205ENST00000394892 UTP14AQ9BVJ6 771 aaKnown RBP11.54□□□□□ -0.56
ATG4A-205ENST00000394892 ZNF541Q9H0D2 1346 aa11.54□□□□□ -0.56
ATG4A-205ENST00000394892 ATP5J2-PTCD1G3V325 749 aa11.53□□□□□ -0.56
ATG4A-205ENST00000394892 POTEIP0CG38 1075 aa11.53□□□□□ -0.56
ATG4A-205ENST00000394892 POTEJP0CG39 1038 aa11.53□□□□□ -0.56
ATG4A-205ENST00000394892 ALDH1B1P30837 517 aa11.53□□□□□ -0.56
ATG4A-205ENST00000394892 GNAI1P63096 354 aa11.53□□□□□ -0.56
ATG4A-205ENST00000394892 CHADLQ6NUI6 762 aa11.53□□□□□ -0.56
ATG4A-205ENST00000394892 WWC1Q8IX03 1113 aa11.53□□□□□ -0.56
ATG4A-205ENST00000394892 PLBD2Q8NHP8 589 aa11.53□□□□□ -0.56
ATG4A-205ENST00000394892 TSR2Q969E8 191 aaKnown RBP11.53□□□□□ -0.56
ATG4A-205ENST00000394892 CRAMP1Q96RY5 1269 aa11.53□□□□□ -0.56
ATG4A-205ENST00000394892 FER1L6Q2WGJ9 1857 aa11.53□□□□□ -0.56
ATG4A-205ENST00000394892 IQCA1LA6NCM1 817 aa11.52□□□□□ -0.57
ATG4A-205ENST00000394892 ANKRD13DQ6ZTN6 518 aa11.52□□□□□ -0.57
ATG4A-205ENST00000394892 PPP1R42Q7Z4L9 355 aa11.52□□□□□ -0.57
ATG4A-205ENST00000394892 CREBZFQ9NS37 354 aa11.52□□□□□ -0.57
ATG4A-205ENST00000394892 DBF4Q9UBU7 674 aaPredicted RBP11.52□□□□□ -0.57
ATG4A-205ENST00000394892 NUP98P52948 1817 aa11.51□□□□□ -0.57
ATG4A-205ENST00000394892 TCERG1O14776 1098 aaKnown RBP11.51□□□□□ -0.57
ATG4A-205ENST00000394892 CCDC27Q2M243 656 aa11.51□□□□□ -0.57
ATG4A-205ENST00000394892 RTKN2Q8IZC4 609 aa11.51□□□□□ -0.57
ATG4A-205ENST00000394892 PSMD1Q99460 953 aa11.51□□□□□ -0.57
ATG4A-205ENST00000394892 MRS2Q9HD23 443 aa11.51□□□□□ -0.57
ATG4A-205ENST00000394892 SPINK5Q9NQ38 1064 aaPredicted RBP11.51□□□□□ -0.57
ATG4A-205ENST00000394892 TRMT112Q9UI30 125 aaKnown RBP11.51□□□□□ -0.57
ATG4A-205ENST00000394892 COL4A1P02462 1669 aa11.51□□□□□ -0.57
ATG4A-205ENST00000394892 ABCC4O15439 1325 aa11.51□□□□□ -0.57
ATG4A-205ENST00000394892 FZD9O00144 591 aa11.5□□□□□ -0.57
ATG4A-205ENST00000394892 IARSP41252 1262 aaKnown RBP11.5□□□□□ -0.57
ATG4A-205ENST00000394892 TRIM28Q13263 835 aaKnown RBP11.5□□□□□ -0.57
ATG4A-205ENST00000394892 HSP90AB3PQ58FF7 597 aa11.5□□□□□ -0.57
ATG4A-205ENST00000394892 RPGRQ92834 1020 aaKnown RBP11.5□□□□□ -0.57
ATG4A-205ENST00000394892 FAM89AQ96GI7 184 aa11.5□□□□□ -0.57
ATG4A-205ENST00000394892 RBM17Q96I25 401 aaKnown RBP11.5□□□□□ -0.57
ATG4A-205ENST00000394892 NLRP3Q96P20 1036 aa11.5□□□□□ -0.57
ATG4A-205ENST00000394892 HYPKQ9NX55 129 aa11.5□□□□□ -0.57
ATG4A-205ENST00000394892 ARFGEF2Q9Y6D5 1785 aa11.49□□□□□ -0.57
ATG4A-205ENST00000394892 PPEF1O14829 653 aaPredicted RBP11.49□□□□□ -0.57
ATG4A-205ENST00000394892 G2E3Q7L622 706 aa11.49□□□□□ -0.57
ATG4A-205ENST00000394892 JARID2Q92833 1246 aaPredicted RBP11.49□□□□□ -0.57
ATG4A-205ENST00000394892 AIDAQ96BJ3 306 aa11.49□□□□□ -0.57
ATG4A-205ENST00000394892 L3MBTL3Q96JM7 780 aaPredicted RBP11.49□□□□□ -0.57
ATG4A-205ENST00000394892 MKRN1Q9UHC7 482 aaKnown RBP11.49□□□□□ -0.57
ATG4A-205ENST00000394892 ATP6V0A2Q9Y487 856 aa11.49□□□□□ -0.57
ATG4A-205ENST00000394892 SH3TC1Q8TE82 1336 aa11.49□□□□□ -0.57
ATG4A-205ENST00000394892 TIAM2Q8IVF5 1701 aa11.49□□□□□ -0.57
ATG4A-205ENST00000394892 RTL5Q5HYW3 569 aaPredicted RBP11.48□□□□□ -0.57
ATG4A-205ENST00000394892 LDHDQ86WU2 507 aa11.48□□□□□ -0.57
ATG4A-205ENST00000394892 SALL2Q9Y467 1007 aaPredicted RBP11.48□□□□□ -0.57
ATG4A-205ENST00000394892 RNF123Q5XPI4 1314 aa11.48□□□□□ -0.57
ATG4A-205ENST00000394892 ANP32CO43423 234 aa11.47□□□□□ -0.57
ATG4A-205ENST00000394892 IGKV5-2P06315 115 aa11.47□□□□□ -0.57
ATG4A-205ENST00000394892 CALD1Q05682 793 aaKnown RBP11.47□□□□□ -0.57
ATG4A-205ENST00000394892 SF3B3Q15393 1217 aaKnown RBP11.47□□□□□ -0.57
ATG4A-205ENST00000394892 NCBP3Q53F19 620 aaKnown RBP11.47□□□□□ -0.57
ATG4A-205ENST00000394892 CC2D2BQ6DHV5 1058 aa11.47□□□□□ -0.57
ATG4A-205ENST00000394892 CELF1Q92879 486 aaKnown RBP11.47□□□□□ -0.57
ATG4A-205ENST00000394892 RTFDC1Q9BY42 306 aaPredicted RBP11.47□□□□□ -0.57
ATG4A-205ENST00000394892 TAF1DQ9H5J8 278 aaPredicted RBP11.47□□□□□ -0.57
ATG4A-205ENST00000394892 IL16Q14005 1332 aa11.46□□□□□ -0.57
ATG4A-205ENST00000394892 GRAPQ13588 217 aa11.46□□□□□ -0.57
ATG4A-205ENST00000394892 SP8Q8IXZ3 490 aa11.46□□□□□ -0.57
ATG4A-205ENST00000394892 GRAPLQ8TC17 118 aaPredicted RBP11.46□□□□□ -0.57
ATG4A-205ENST00000394892 MYD88Q99836 296 aa11.46□□□□□ -0.57
ATG4A-205ENST00000394892 CLEC11AQ9Y240 323 aa11.46□□□□□ -0.57
ATG4A-205ENST00000394892 CACNA1SQ13698 1873 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms