RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 LRMPQ12912 555 aa16.61■□□□□ 0.25
RTF1-201ENST00000389629 ELF2Q15723 593 aa16.61■□□□□ 0.25
RTF1-201ENST00000389629 SYT10Q6XYQ8 523 aa16.61■□□□□ 0.25
RTF1-201ENST00000389629 AOPEPQ8N6M6 819 aa16.61■□□□□ 0.25
RTF1-201ENST00000389629 ADCY10Q96PN6 1610 aa16.61■□□□□ 0.25
RTF1-201ENST00000389629 RDXP35241 583 aaKnown RBP16.61■□□□□ 0.25
RTF1-201ENST00000389629 GNG11P61952 73 aa16.61■□□□□ 0.25
RTF1-201ENST00000389629 GPATCH11Q8N954 259 aa16.61■□□□□ 0.25
RTF1-201ENST00000389629 FKBP4Q02790 459 aaKnown RBP eCLIP16.6■□□□□ 0.25
RTF1-201ENST00000389629 JAKMIP3Q5VZ66 844 aa16.6■□□□□ 0.25
RTF1-201ENST00000389629 PHAXQ9H814 394 aaKnown RBP16.6■□□□□ 0.25
RTF1-201ENST00000389629 PYCARDQ9ULZ3 195 aa16.6■□□□□ 0.25
RTF1-201ENST00000389629 ESCO1Q5FWF5 840 aa16.6■□□□□ 0.25
RTF1-201ENST00000389629 DHX37Q8IY37 1157 aaKnown RBP16.6■□□□□ 0.25
RTF1-201ENST00000389629 KIF4BQ2VIQ3 1234 aa16.6■□□□□ 0.25
RTF1-201ENST00000389629 HSP90AA4PQ58FG1 418 aa16.6■□□□□ 0.25
RTF1-201ENST00000389629 SMARCE1Q969G3 411 aa16.6■□□□□ 0.25
RTF1-201ENST00000389629 SYTL4Q96C24 671 aaPredicted RBP16.6■□□□□ 0.25
RTF1-201ENST00000389629 IBSPP21815 317 aaPredicted RBP16.59■□□□□ 0.25
RTF1-201ENST00000389629 DBF4Q9UBU7 674 aaPredicted RBP16.59■□□□□ 0.25
RTF1-201ENST00000389629 C10orf67Q8IYJ2 551 aa16.59■□□□□ 0.25
RTF1-201ENST00000389629 NEK1Q96PY6 1258 aa16.59■□□□□ 0.25
RTF1-201ENST00000389629 CPLX3Q8WVH0 158 aa16.59■□□□□ 0.25
RTF1-201ENST00000389629 BRF1Q92994 677 aa16.59■□□□□ 0.25
RTF1-201ENST00000389629 VPS53Q5VIR6 699 aa16.59■□□□□ 0.25
RTF1-201ENST00000389629 ASXL2Q76L83 1435 aa16.58■□□□□ 0.25
RTF1-201ENST00000389629 SGSM2O43147 1006 aa16.58■□□□□ 0.25
RTF1-201ENST00000389629 MCM6Q14566 821 aa16.58■□□□□ 0.25
RTF1-201ENST00000389629 PREX2Q70Z35 1606 aa16.58■□□□□ 0.25
RTF1-201ENST00000389629 SLC3A2P08195 630 aaKnown RBP16.58■□□□□ 0.24
RTF1-201ENST00000389629 GABPB1Q06547 395 aaPredicted RBP16.58■□□□□ 0.24
RTF1-201ENST00000389629 NMIQ13287 307 aaPredicted RBP16.58■□□□□ 0.24
RTF1-201ENST00000389629 NPHP3Q7Z494 1330 aa16.58■□□□□ 0.24
RTF1-201ENST00000389629 POLR3DP05423 398 aaPredicted RBP16.58■□□□□ 0.24
RTF1-201ENST00000389629 HSPA4P34932 840 aa16.58■□□□□ 0.24
RTF1-201ENST00000389629 CREB3L3Q68CJ9 461 aa16.58■□□□□ 0.24
RTF1-201ENST00000389629 PLXNC1O60486 1568 aa16.58■□□□□ 0.24
RTF1-201ENST00000389629 CAVIN2O95810 425 aa16.57■□□□□ 0.24
RTF1-201ENST00000389629 IQGAP3Q86VI3 1631 aa16.57■□□□□ 0.24
RTF1-201ENST00000389629 TXLNBQ8N3L3 684 aa16.57■□□□□ 0.24
RTF1-201ENST00000389629 USP16Q9Y5T5 823 aa16.57■□□□□ 0.24
RTF1-201ENST00000389629 RUFY3Q7L099 469 aa16.57■□□□□ 0.24
RTF1-201ENST00000389629 CBX8Q9HC52 389 aa16.57■□□□□ 0.24
RTF1-201ENST00000389629 HSP90AB3PQ58FF7 597 aa16.57■□□□□ 0.24
RTF1-201ENST00000389629 CCDC191Q8NCU4 936 aa16.57■□□□□ 0.24
RTF1-201ENST00000389629 RAD50Q92878 1312 aa16.57■□□□□ 0.24
RTF1-201ENST00000389629 KIF24Q5T7B8 1368 aa16.56■□□□□ 0.24
RTF1-201ENST00000389629 MYD88Q99836 296 aa16.56■□□□□ 0.24
RTF1-201ENST00000389629 U3KPZ7 1027 aaPredicted RBP16.56■□□□□ 0.24
RTF1-201ENST00000389629 MYOM2P54296 1465 aa16.56■□□□□ 0.24
RTF1-201ENST00000389629 ARFGAP3Q9NP61 516 aa16.56■□□□□ 0.24
RTF1-201ENST00000389629 MYO5CQ9NQX4 1742 aa16.56■□□□□ 0.24
RTF1-201ENST00000389629 UTP14CQ5TAP6 766 aaKnown RBP16.56■□□□□ 0.24
RTF1-201ENST00000389629 KLHL10Q6JEL2 608 aa16.56■□□□□ 0.24
RTF1-201ENST00000389629 EPB41L2O43491 1005 aaKnown RBP16.55■□□□□ 0.24
RTF1-201ENST00000389629 TTC39AQ5SRH9 613 aa16.55■□□□□ 0.24
RTF1-201ENST00000389629 C8orf76Q96K31 380 aa16.55■□□□□ 0.24
RTF1-201ENST00000389629 ERICH2A1L162 156 aa16.55■□□□□ 0.24
RTF1-201ENST00000389629 KIAA0754O94854 1291 aa16.55■□□□□ 0.24
RTF1-201ENST00000389629 LMOD1P29536 600 aaPredicted RBP16.55■□□□□ 0.24
RTF1-201ENST00000389629 IPO4Q8TEX9 1081 aaKnown RBP16.55■□□□□ 0.24
RTF1-201ENST00000389629 EYA1Q99502 592 aa16.55■□□□□ 0.24
RTF1-201ENST00000389629 CCDC158Q5M9N0 1113 aa16.55■□□□□ 0.24
RTF1-201ENST00000389629 CCDC150Q8NCX0 1101 aa16.55■□□□□ 0.24
RTF1-201ENST00000389629 CCDC12Q8WUD4 166 aaPredicted RBP16.55■□□□□ 0.24
RTF1-201ENST00000389629 ERO1AQ96HE7 468 aa16.55■□□□□ 0.24
RTF1-201ENST00000389629 CENPHQ9H3R5 247 aa16.55■□□□□ 0.24
RTF1-201ENST00000389629 ZSCAN16Q9H4T2 348 aaPredicted RBP16.55■□□□□ 0.24
RTF1-201ENST00000389629 ZNF75DP51815 510 aa16.54■□□□□ 0.24
RTF1-201ENST00000389629 RRP12Q5JTH9 1297 aaKnown RBP16.54■□□□□ 0.24
RTF1-201ENST00000389629 UNC5CLQ8IV45 518 aa16.54■□□□□ 0.24
RTF1-201ENST00000389629 HMG20BQ9P0W2 317 aa16.54■□□□□ 0.24
RTF1-201ENST00000389629 LARP1Q6PKG0 1096 aaKnown RBP16.54■□□□□ 0.24
RTF1-201ENST00000389629 RAB11FIP4Q86YS3 637 aa16.54■□□□□ 0.24
RTF1-201ENST00000389629 RNF216Q9NWF9 866 aaPredicted RBP16.54■□□□□ 0.24
RTF1-201ENST00000389629 TTC41PQ6P2S7 1318 aa16.54■□□□□ 0.24
RTF1-201ENST00000389629 KIF5CO60282 957 aa16.54■□□□□ 0.24
RTF1-201ENST00000389629 Q6ZUG5 572 aa16.54■□□□□ 0.24
RTF1-201ENST00000389629 GTF2A1P52655 376 aaPredicted RBP16.53■□□□□ 0.24
RTF1-201ENST00000389629 RSPH14Q9UHP6 348 aa16.53■□□□□ 0.24
RTF1-201ENST00000389629 LIG1P18858 919 aa16.53■□□□□ 0.24
RTF1-201ENST00000389629 CRACR2AQ9BSW2 395 aa16.53■□□□□ 0.24
RTF1-201ENST00000389629 ATP2B3Q16720 1220 aa16.53■□□□□ 0.24
RTF1-201ENST00000389629 DDX46Q7L014 1031 aaKnown RBP16.53■□□□□ 0.24
RTF1-201ENST00000389629 ZNF215Q9UL58 517 aaPredicted RBP16.53■□□□□ 0.24
RTF1-201ENST00000389629 MADDQ8WXG6 1647 aa16.52■□□□□ 0.24
RTF1-201ENST00000389629 CCDC85AQ96PX6 553 aaPredicted RBP16.52■□□□□ 0.24
RTF1-201ENST00000389629 IFNKQ9P0W0 207 aa16.52■□□□□ 0.24
RTF1-201ENST00000389629 PHACTR2O75167 634 aa16.52■□□□□ 0.24
RTF1-201ENST00000389629 HMGB1P09429 215 aaKnown RBP16.52■□□□□ 0.24
RTF1-201ENST00000389629 UNC13BO14795 1591 aa16.52■□□□□ 0.23
RTF1-201ENST00000389629 ZNF853P0CG23 659 aa16.52■□□□□ 0.23
RTF1-201ENST00000389629 UBASH3AP57075 661 aa16.52■□□□□ 0.23
RTF1-201ENST00000389629 CDC37L1Q7L3B6 337 aa16.52■□□□□ 0.23
RTF1-201ENST00000389629 DACH1Q9UI36 760 aa16.52■□□□□ 0.23
RTF1-201ENST00000389629 ZDHHC9Q9Y397 364 aa16.52■□□□□ 0.23
RTF1-201ENST00000389629 MAP3K19Q56UN5 1328 aa16.52■□□□□ 0.23
RTF1-201ENST00000389629 CLSTN1O94985 981 aa16.52■□□□□ 0.23
RTF1-201ENST00000389629 CUL4AQ13619 759 aa16.52■□□□□ 0.23
RTF1-201ENST00000389629 CWF19L2Q2TBE0 894 aaKnown RBP16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 109.2 ms