RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 KRT28Q7Z3Y7 464 aa16.48■□□□□ 0.23
SDC1-202ENST00000381150 SSH3Q8TE77 659 aa16.48■□□□□ 0.23
SDC1-202ENST00000381150 ANKRD24Q8TF21 1146 aa16.48■□□□□ 0.23
SDC1-202ENST00000381150 TRMT1Q9NXH9 659 aaKnown RBP16.48■□□□□ 0.23
SDC1-202ENST00000381150 RNMTO43148 476 aaKnown RBP16.48■□□□□ 0.23
SDC1-202ENST00000381150 CCDC192P0DO97 292 aa16.48■□□□□ 0.23
SDC1-202ENST00000381150 CHPF2Q9P2E5 772 aa16.48■□□□□ 0.23
SDC1-202ENST00000381150 TFIP11Q9UBB9 837 aaKnown RBP16.48■□□□□ 0.23
SDC1-202ENST00000381150 OVOS2A0A0G2JMS6 1433 aa16.48■□□□□ 0.23
SDC1-202ENST00000381150 CHMLP26374 656 aa16.48■□□□□ 0.23
SDC1-202ENST00000381150 NECAB1Q8N987 351 aa16.48■□□□□ 0.23
SDC1-202ENST00000381150 KIF1AQ12756 1690 aa16.47■□□□□ 0.23
SDC1-202ENST00000381150 EIF2S2P20042 333 aaKnown RBP16.47■□□□□ 0.23
SDC1-202ENST00000381150 TAOK2Q9UL54 1235 aa16.47■□□□□ 0.23
SDC1-202ENST00000381150 BTBD11A6QL63 1104 aa16.47■□□□□ 0.23
SDC1-202ENST00000381150 BEND3Q5T5X7 828 aa16.47■□□□□ 0.23
SDC1-202ENST00000381150 PROSER2Q86WR7 435 aaPredicted RBP16.47■□□□□ 0.23
SDC1-202ENST00000381150 IL25Q9H293 177 aa16.47■□□□□ 0.23
SDC1-202ENST00000381150 STAP2Q9UGK3 403 aa16.47■□□□□ 0.23
SDC1-202ENST00000381150 POLA2Q14181 598 aa16.46■□□□□ 0.23
SDC1-202ENST00000381150 CASTP20810 708 aaKnown RBP16.46■□□□□ 0.23
SDC1-202ENST00000381150 GTF2E1P29083 439 aaPredicted RBP16.46■□□□□ 0.23
SDC1-202ENST00000381150 AK2P54819 239 aa16.46■□□□□ 0.23
SDC1-202ENST00000381150 ZBTB9Q96C00 473 aa16.46■□□□□ 0.23
SDC1-202ENST00000381150 SYTL4Q96C24 671 aaPredicted RBP16.46■□□□□ 0.23
SDC1-202ENST00000381150 C19orf44Q9H6X5 657 aa16.46■□□□□ 0.23
SDC1-202ENST00000381150 FOSBP53539 338 aa16.46■□□□□ 0.22
SDC1-202ENST00000381150 CEBPZQ03701 1054 aaKnown RBP16.46■□□□□ 0.22
SDC1-202ENST00000381150 NCBP1Q09161 790 aaKnown RBP16.46■□□□□ 0.22
SDC1-202ENST00000381150 CUL4AQ13619 759 aa16.46■□□□□ 0.22
SDC1-202ENST00000381150 LMTK3Q96Q04 1460 aa16.46■□□□□ 0.22
SDC1-202ENST00000381150 UBTFL1P0CB47 393 aaPredicted RBP16.45■□□□□ 0.22
SDC1-202ENST00000381150 TEFQ10587 303 aa16.45■□□□□ 0.22
SDC1-202ENST00000381150 OS9Q13438 667 aaPredicted RBP16.45■□□□□ 0.22
SDC1-202ENST00000381150 FILIP1Q7Z7B0 1213 aa16.45■□□□□ 0.22
SDC1-202ENST00000381150 TCEANC2Q96MN5 208 aa16.45■□□□□ 0.22
SDC1-202ENST00000381150 ADCY9O60503 1353 aa16.45■□□□□ 0.22
SDC1-202ENST00000381150 NBPF7P0C2Y1 421 aaPredicted RBP16.45■□□□□ 0.22
SDC1-202ENST00000381150 GJB2P29033 226 aa16.45■□□□□ 0.22
SDC1-202ENST00000381150 INTS4Q96HW7 963 aaKnown RBP16.45■□□□□ 0.22
SDC1-202ENST00000381150 ATP6V1DQ9Y5K8 247 aa16.45■□□□□ 0.22
SDC1-202ENST00000381150 PI4KAP2A4QPH2 592 aa16.44■□□□□ 0.22
SDC1-202ENST00000381150 GTF2F1P35269 517 aaKnown RBP eCLIP16.44■□□□□ 0.22
SDC1-202ENST00000381150 PI4KAP1Q8N8J0 262 aa16.44■□□□□ 0.22
SDC1-202ENST00000381150 F13A1P00488 732 aa16.44■□□□□ 0.22
SDC1-202ENST00000381150 SPTLC3Q9NUV7 552 aa16.44■□□□□ 0.22
SDC1-202ENST00000381150 GIGYF1O75420 1035 aaPredicted RBP16.44■□□□□ 0.22
SDC1-202ENST00000381150 STRCP1A6NGW2 1772 aa16.43■□□□□ 0.22
SDC1-202ENST00000381150 ANXA1P04083 346 aa16.43■□□□□ 0.22
SDC1-202ENST00000381150 PPP1R42Q7Z4L9 355 aa16.43■□□□□ 0.22
SDC1-202ENST00000381150 BICD2Q8TD16 824 aa16.43■□□□□ 0.22
SDC1-202ENST00000381150 DNAAF4Q8WXU2 420 aa16.43■□□□□ 0.22
SDC1-202ENST00000381150 CHMP4AQ9BY43 222 aa16.43■□□□□ 0.22
SDC1-202ENST00000381150 TNMDQ9H2S6 317 aa16.43■□□□□ 0.22
SDC1-202ENST00000381150 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.43■□□□□ 0.22
SDC1-202ENST00000381150 SURF6O75683 361 aaKnown RBP16.43■□□□□ 0.22
SDC1-202ENST00000381150 STK3Q13188 491 aa16.43■□□□□ 0.22
SDC1-202ENST00000381150 ANO6Q4KMQ2 910 aa16.43■□□□□ 0.22
SDC1-202ENST00000381150 NUP62CLQ9H1M0 184 aa16.43■□□□□ 0.22
SDC1-202ENST00000381150 OGFRQ9NZT2 677 aa16.43■□□□□ 0.22
SDC1-202ENST00000381150 CRYBG1Q9Y4K1 1723 aa16.43■□□□□ 0.22
SDC1-202ENST00000381150 ERBB3P21860 1342 aa16.43■□□□□ 0.22
SDC1-202ENST00000381150 LMOD2Q6P5Q4 547 aa16.43■□□□□ 0.22
SDC1-202ENST00000381150 COL18A1P39060 1754 aa16.42■□□□□ 0.22
SDC1-202ENST00000381150 LARGE1O95461 756 aa16.42■□□□□ 0.22
SDC1-202ENST00000381150 MAP3K11Q16584 847 aa16.42■□□□□ 0.22
SDC1-202ENST00000381150 RASEFQ8IZ41 740 aa16.42■□□□□ 0.22
SDC1-202ENST00000381150 JAKMIP1Q96N16 626 aaKnown RBP16.42■□□□□ 0.22
SDC1-202ENST00000381150 ST7Q9NRC1 585 aa16.42■□□□□ 0.22
SDC1-202ENST00000381150 PRAMEF22A3QJZ6 481 aa16.41■□□□□ 0.22
SDC1-202ENST00000381150 C1orf141Q5JVX7 400 aa16.41■□□□□ 0.22
SDC1-202ENST00000381150 GORABQ5T7V8 394 aa16.41■□□□□ 0.22
SDC1-202ENST00000381150 NAP1L2Q9ULW6 460 aaPredicted RBP16.41■□□□□ 0.22
SDC1-202ENST00000381150 PROSER3Q2NL68 480 aa16.41■□□□□ 0.22
SDC1-202ENST00000381150 DACT1Q9NYF0 836 aa16.41■□□□□ 0.22
SDC1-202ENST00000381150 DBF4Q9UBU7 674 aaPredicted RBP16.41■□□□□ 0.22
SDC1-202ENST00000381150 LIG1P18858 919 aa16.41■□□□□ 0.22
SDC1-202ENST00000381150 LARP1BQ659C4 914 aaKnown RBP16.41■□□□□ 0.22
SDC1-202ENST00000381150 CLIP2Q9UDT6 1046 aa16.41■□□□□ 0.22
SDC1-202ENST00000381150 LIMCH1Q9UPQ0 1083 aa16.41■□□□□ 0.22
SDC1-202ENST00000381150 PPFIA3O75145 1194 aa16.4■□□□□ 0.22
SDC1-202ENST00000381150 A0A087WWV3 80 aa16.4■□□□□ 0.22
SDC1-202ENST00000381150 TYRO3Q06418 890 aa16.4■□□□□ 0.22
SDC1-202ENST00000381150 ARID5BQ14865 1188 aa16.4■□□□□ 0.22
SDC1-202ENST00000381150 PRPF40BQ6NWY9 871 aaKnown RBP16.4■□□□□ 0.22
SDC1-202ENST00000381150 DNAJC25Q9H1X3 360 aa16.4■□□□□ 0.22
SDC1-202ENST00000381150 AOX1Q06278 1338 aa16.4■□□□□ 0.22
SDC1-202ENST00000381150 RAB11FIP3O75154 756 aa16.39■□□□□ 0.21
SDC1-202ENST00000381150 FAM200AQ8TCP9 573 aa16.39■□□□□ 0.21
SDC1-202ENST00000381150 FEZ1Q99689 392 aa16.39■□□□□ 0.21
SDC1-202ENST00000381150 SCN11AQ9UI33 1791 aa16.39■□□□□ 0.21
SDC1-202ENST00000381150 GOLGA6L19H0YKK7 550 aa16.39■□□□□ 0.21
SDC1-202ENST00000381150 TPM3P06753 285 aa16.39■□□□□ 0.21
SDC1-202ENST00000381150 ZC3H6P61129 1189 aaKnown RBP16.39■□□□□ 0.21
SDC1-202ENST00000381150 RUFY3Q7L099 469 aa16.39■□□□□ 0.21
SDC1-202ENST00000381150 CEP135Q66GS9 1140 aa16.38■□□□□ 0.21
SDC1-202ENST00000381150 ANKRD7Q92527 254 aa16.38■□□□□ 0.21
SDC1-202ENST00000381150 MTX1Q13505 466 aa16.38■□□□□ 0.21
SDC1-202ENST00000381150 RHPN1Q8TCX5 695 aa16.38■□□□□ 0.21
SDC1-202ENST00000381150 DDX17Q92841 729 aaKnown RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms