RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 RBM42Q9BTD8 480 aaKnown RBP13.57□□□□□ -0.24
NPHP4-202ENST00000378161 TPD52L2O43399 206 aaKnown RBP13.57□□□□□ -0.24
NPHP4-202ENST00000378161 UBE2HP62256 183 aa13.57□□□□□ -0.24
NPHP4-202ENST00000378161 B4GALNT4Q76KP1 1039 aa13.57□□□□□ -0.24
NPHP4-202ENST00000378161 LTV1Q96GA3 475 aaPredicted RBP13.57□□□□□ -0.24
NPHP4-202ENST00000378161 PRDM16Q9HAZ2 1276 aa13.57□□□□□ -0.24
NPHP4-202ENST00000378161 KIF21AQ7Z4S6 1674 aa13.57□□□□□ -0.24
NPHP4-202ENST00000378161 ATP10BO94823 1461 aa13.57□□□□□ -0.24
NPHP4-202ENST00000378161 ADGRL2O95490 1459 aa13.57□□□□□ -0.24
NPHP4-202ENST00000378161 TRIM27P14373 513 aa13.57□□□□□ -0.24
NPHP4-202ENST00000378161 IQCA1Q86XH1 822 aa13.57□□□□□ -0.24
NPHP4-202ENST00000378161 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.57□□□□□ -0.24
NPHP4-202ENST00000378161 MAP9Q49MG5 647 aa13.57□□□□□ -0.24
NPHP4-202ENST00000378161 KIF1BPQ96EK5 621 aa13.57□□□□□ -0.24
NPHP4-202ENST00000378161 ANKRD36BQ8N2N9 1353 aa13.57□□□□□ -0.24
NPHP4-202ENST00000378161 ZSCAN12O43309 604 aa13.56□□□□□ -0.24
NPHP4-202ENST00000378161 HSP90AB4PQ58FF6 505 aa13.56□□□□□ -0.24
NPHP4-202ENST00000378161 AFAP1L1Q8TED9 768 aa13.56□□□□□ -0.24
NPHP4-202ENST00000378161 KIF2CQ99661 725 aa13.56□□□□□ -0.24
NPHP4-202ENST00000378161 PCDHB15Q9Y5E8 787 aa13.56□□□□□ -0.24
NPHP4-202ENST00000378161 COL17A1Q9UMD9 1497 aaPredicted RBP13.56□□□□□ -0.24
NPHP4-202ENST00000378161 ERC2O15083 957 aa13.56□□□□□ -0.24
NPHP4-202ENST00000378161 CCDC114Q96M63 670 aa13.56□□□□□ -0.24
NPHP4-202ENST00000378161 CABP1Q9NZU7 370 aa13.56□□□□□ -0.24
NPHP4-202ENST00000378161 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.56□□□□□ -0.24
NPHP4-202ENST00000378161 ARHGAP25P42331 645 aa13.56□□□□□ -0.24
NPHP4-202ENST00000378161 ST5P78524 1137 aa13.56□□□□□ -0.24
NPHP4-202ENST00000378161 LCMT1Q9UIC8 334 aa13.56□□□□□ -0.24
NPHP4-202ENST00000378161 ABCD1P33897 745 aa13.55□□□□□ -0.24
NPHP4-202ENST00000378161 CORO7P57737 925 aa13.55□□□□□ -0.24
NPHP4-202ENST00000378161 CCDC30Q5VVM6 783 aa13.55□□□□□ -0.24
NPHP4-202ENST00000378161 SF3A1Q15459 793 aaKnown RBP13.55□□□□□ -0.24
NPHP4-202ENST00000378161 NFE2L2Q16236 605 aa13.55□□□□□ -0.24
NPHP4-202ENST00000378161 RPAP2Q8IXW5 612 aaPredicted RBP13.55□□□□□ -0.24
NPHP4-202ENST00000378161 KLHL23Q8NBE8 558 aa13.55□□□□□ -0.24
NPHP4-202ENST00000378161 RMI1Q9H9A7 625 aa13.55□□□□□ -0.24
NPHP4-202ENST00000378161 SPINK5Q9NQ38 1064 aaPredicted RBP13.55□□□□□ -0.24
NPHP4-202ENST00000378161 KIAA0556O60303 1618 aa13.55□□□□□ -0.24
NPHP4-202ENST00000378161 NSD2O96028 1365 aa13.55□□□□□ -0.24
NPHP4-202ENST00000378161 PPFIA4O75335 1185 aa13.55□□□□□ -0.24
NPHP4-202ENST00000378161 USP48Q86UV5 1035 aa13.55□□□□□ -0.24
NPHP4-202ENST00000378161 DZIP1Q86YF9 867 aaKnown RBP13.55□□□□□ -0.24
NPHP4-202ENST00000378161 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.55□□□□□ -0.24
NPHP4-202ENST00000378161 TAX1BP1Q86VP1 789 aa13.55□□□□□ -0.24
NPHP4-202ENST00000378161 GOLGA1Q92805 767 aa13.55□□□□□ -0.24
NPHP4-202ENST00000378161 CDK19Q9BWU1 502 aa13.55□□□□□ -0.24
NPHP4-202ENST00000378161 ZCCHC17Q9NP64 241 aaKnown RBP13.55□□□□□ -0.24
NPHP4-202ENST00000378161 LRMPQ12912 555 aa13.54□□□□□ -0.24
NPHP4-202ENST00000378161 WDR66Q8TBY9 1149 aa13.54□□□□□ -0.24
NPHP4-202ENST00000378161 TRIM4Q9C037 500 aa13.54□□□□□ -0.24
NPHP4-202ENST00000378161 ECM2O94769 699 aaPredicted RBP13.54□□□□□ -0.24
NPHP4-202ENST00000378161 ZNF165P49910 485 aa13.54□□□□□ -0.24
NPHP4-202ENST00000378161 CRYMQ14894 314 aa13.54□□□□□ -0.24
NPHP4-202ENST00000378161 EIF2AK4Q9P2K8 1649 aaKnown RBP13.54□□□□□ -0.24
NPHP4-202ENST00000378161 SNUPNO95149 360 aaKnown RBP13.54□□□□□ -0.24
NPHP4-202ENST00000378161 TEFQ10587 303 aa13.54□□□□□ -0.24
NPHP4-202ENST00000378161 BMP2KLQ5H9B9 411 aa13.54□□□□□ -0.24
NPHP4-202ENST00000378161 POLR3AO14802 1390 aaPredicted RBP13.54□□□□□ -0.24
NPHP4-202ENST00000378161 CCDC69A6NI79 296 aa13.53□□□□□ -0.24
NPHP4-202ENST00000378161 ZSCAN25Q6NSZ9 544 aa13.53□□□□□ -0.24
NPHP4-202ENST00000378161 ZNHIT6Q9NWK9 470 aaKnown RBP13.53□□□□□ -0.24
NPHP4-202ENST00000378161 H3BQV1 296 aa13.53□□□□□ -0.24
NPHP4-202ENST00000378161 SSBP05455 408 aaKnown RBP eCLIP13.53□□□□□ -0.24
NPHP4-202ENST00000378161 IFFO2Q5TF58 517 aa13.53□□□□□ -0.24
NPHP4-202ENST00000378161 SEPT14Q6ZU15 432 aa13.53□□□□□ -0.24
NPHP4-202ENST00000378161 ADAMTS12P58397 1594 aa13.53□□□□□ -0.24
NPHP4-202ENST00000378161 CAMK4Q16566 473 aa13.53□□□□□ -0.24
NPHP4-202ENST00000378161 RRP12Q5JTH9 1297 aaKnown RBP13.53□□□□□ -0.24
NPHP4-202ENST00000378161 ZMYM3Q14202 1370 aa13.53□□□□□ -0.24
NPHP4-202ENST00000378161 MAFGO15525 162 aa13.53□□□□□ -0.24
NPHP4-202ENST00000378161 UBTFL1P0CB47 393 aaPredicted RBP13.53□□□□□ -0.24
NPHP4-202ENST00000378161 MAGI3Q5TCQ9 1506 aa13.53□□□□□ -0.24
NPHP4-202ENST00000378161 NECTIN2Q92692 538 aa13.53□□□□□ -0.24
NPHP4-202ENST00000378161 MIEF2Q96C03 454 aa13.53□□□□□ -0.24
NPHP4-202ENST00000378161 C9orf78Q9NZ63 289 aaPredicted RBP13.53□□□□□ -0.24
NPHP4-202ENST00000378161 GOLGA6L10A0A0M3HER8 536 aa13.52□□□□□ -0.24
NPHP4-202ENST00000378161 KLHL33A6NCF5 533 aa13.52□□□□□ -0.24
NPHP4-202ENST00000378161 GNAI2P04899 355 aa13.52□□□□□ -0.24
NPHP4-202ENST00000378161 IFIT2P09913 472 aaKnown RBP13.52□□□□□ -0.24
NPHP4-202ENST00000378161 ISM2Q6H9L7 571 aa13.52□□□□□ -0.24
NPHP4-202ENST00000378161 CARD6Q9BX69 1037 aa13.52□□□□□ -0.24
NPHP4-202ENST00000378161 IL16Q14005 1332 aa13.52□□□□□ -0.25
NPHP4-202ENST00000378161 SEC31AO94979 1220 aaKnown RBP13.52□□□□□ -0.25
NPHP4-202ENST00000378161 FBXW7Q969H0 707 aa13.52□□□□□ -0.25
NPHP4-202ENST00000378161 ANKRD18BA2A2Z9 1011 aa13.52□□□□□ -0.25
NPHP4-202ENST00000378161 KINO60870 393 aaKnown RBP13.52□□□□□ -0.25
NPHP4-202ENST00000378161 EIF2S2P20042 333 aaKnown RBP13.52□□□□□ -0.25
NPHP4-202ENST00000378161 SLC8A1P32418 973 aa13.52□□□□□ -0.25
NPHP4-202ENST00000378161 SPDL1Q96EA4 605 aa13.52□□□□□ -0.25
NPHP4-202ENST00000378161 ZNF692Q9BU19 519 aaPredicted RBP13.52□□□□□ -0.25
NPHP4-202ENST00000378161 NPC1L1Q9UHC9 1359 aa13.51□□□□□ -0.25
NPHP4-202ENST00000378161 PAX7P23759 505 aa13.51□□□□□ -0.25
NPHP4-202ENST00000378161 KIF5BP33176 963 aa13.51□□□□□ -0.25
NPHP4-202ENST00000378161 CCT4P50991 539 aaKnown RBP13.51□□□□□ -0.25
NPHP4-202ENST00000378161 CCDC158Q5M9N0 1113 aa13.51□□□□□ -0.25
NPHP4-202ENST00000378161 CCDC73Q6ZRK6 1079 aa13.51□□□□□ -0.25
NPHP4-202ENST00000378161 ARMC9Q7Z3E5 817 aa13.51□□□□□ -0.25
NPHP4-202ENST00000378161 ZSWIM4Q9H7M6 989 aa13.51□□□□□ -0.25
NPHP4-202ENST00000378161 PSD3Q9NYI0 1048 aa13.51□□□□□ -0.25
NPHP4-202ENST00000378161 ZMYM4Q5VZL5 1548 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms