RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 NTSR2O95665 410 aa27.49■■□□□ 1.99
VSX1-201ENST00000376707 HOXA10P31260 410 aaPredicted RBP27.47■■□□□ 1.99
VSX1-201ENST00000376707 AIMP1Q12904 312 aaKnown RBP27.47■■□□□ 1.99
VSX1-201ENST00000376707 KLRG1Q96E93 195 aa27.47■■□□□ 1.99
VSX1-201ENST00000376707 KRT24Q2M2I5 525 aa27.46■■□□□ 1.99
VSX1-201ENST00000376707 COPS6Q7L5N1 327 aa27.46■■□□□ 1.99
VSX1-201ENST00000376707 SYNE4Q8N205 404 aa27.46■■□□□ 1.99
VSX1-201ENST00000376707 XAGE3Q8WTP9 111 aa27.46■■□□□ 1.99
VSX1-201ENST00000376707 RBM17Q96I25 401 aaKnown RBP27.46■■□□□ 1.99
VSX1-201ENST00000376707 CC2D2BQ6DHV5 1058 aa27.45■■□□□ 1.98
VSX1-201ENST00000376707 UTP14AQ9BVJ6 771 aaKnown RBP27.45■■□□□ 1.98
VSX1-201ENST00000376707 DDX21Q9NR30 783 aaKnown RBP eCLIP27.45■■□□□ 1.98
VSX1-201ENST00000376707 IQCA1LA6NCM1 817 aa27.44■■□□□ 1.98
VSX1-201ENST00000376707 IARSP41252 1262 aaKnown RBP27.44■■□□□ 1.98
VSX1-201ENST00000376707 HSP90AB3PQ58FF7 597 aa27.44■■□□□ 1.98
VSX1-201ENST00000376707 NLRP3Q96P20 1036 aa27.44■■□□□ 1.98
VSX1-201ENST00000376707 CRAMP1Q96RY5 1269 aa27.44■■□□□ 1.98
VSX1-201ENST00000376707 PSMD1Q99460 953 aa27.43■■□□□ 1.98
VSX1-201ENST00000376707 C3orf67Q6ZVT6 689 aa27.42■■□□□ 1.98
VSX1-201ENST00000376707 L3MBTL3Q96JM7 780 aaPredicted RBP27.42■■□□□ 1.98
VSX1-201ENST00000376707 ZNF541Q9H0D2 1346 aa27.41■■□□□ 1.98
VSX1-201ENST00000376707 GRIPAP1Q4V328 841 aa27.41■■□□□ 1.98
VSX1-201ENST00000376707 HDGFL1Q5TGJ6 251 aa27.41■■□□□ 1.98
VSX1-201ENST00000376707 CHADLQ6NUI6 762 aa27.41■■□□□ 1.98
VSX1-201ENST00000376707 CHPF2Q9P2E5 772 aa27.41■■□□□ 1.98
VSX1-201ENST00000376707 SNED1Q8TER0 1413 aa27.41■■□□□ 1.98
VSX1-201ENST00000376707 RNF123Q5XPI4 1314 aa27.41■■□□□ 1.98
VSX1-201ENST00000376707 TCERG1O14776 1098 aaKnown RBP27.4■■□□□ 1.98
VSX1-201ENST00000376707 PPEF1O14829 653 aaPredicted RBP27.4■■□□□ 1.98
VSX1-201ENST00000376707 HOXB7P09629 217 aa27.4■■□□□ 1.98
VSX1-201ENST00000376707 SLC10A5Q5PT55 438 aa27.4■■□□□ 1.98
VSX1-201ENST00000376707 JDP2Q8WYK2 163 aa27.4■■□□□ 1.98
VSX1-201ENST00000376707 CFAP44Q96MT7 982 aa27.4■■□□□ 1.98
VSX1-201ENST00000376707 NLRP10Q86W26 655 aa27.39■■□□□ 1.98
VSX1-201ENST00000376707 POTEIP0CG38 1075 aa27.38■■□□□ 1.97
VSX1-201ENST00000376707 POTEJP0CG39 1038 aa27.38■■□□□ 1.97
VSX1-201ENST00000376707 TCIRG1Q13488 830 aa27.38■■□□□ 1.97
VSX1-201ENST00000376707 TMX4Q9H1E5 349 aaPredicted RBP27.38■■□□□ 1.97
VSX1-201ENST00000376707 TAF1DQ9H5J8 278 aaPredicted RBP27.38■■□□□ 1.97
VSX1-201ENST00000376707 FZD9O00144 591 aa27.37■■□□□ 1.97
VSX1-201ENST00000376707 JMYQ8N9B5 988 aa27.37■■□□□ 1.97
VSX1-201ENST00000376707 IFFO2Q5TF58 517 aa27.36■■□□□ 1.97
VSX1-201ENST00000376707 DBF4Q9UBU7 674 aaPredicted RBP27.36■■□□□ 1.97
VSX1-201ENST00000376707 TRMT112Q9UI30 125 aaKnown RBP27.36■■□□□ 1.97
VSX1-201ENST00000376707 HACL1Q9UJ83 578 aa27.36■■□□□ 1.97
VSX1-201ENST00000376707 APAF1O14727 1248 aa27.35■■□□□ 1.97
VSX1-201ENST00000376707 DUSP27Q5VZP5 1158 aa27.35■■□□□ 1.97
VSX1-201ENST00000376707 LDHDQ86WU2 507 aa27.35■■□□□ 1.97
VSX1-201ENST00000376707 MBIPQ9NS73 344 aa27.35■■□□□ 1.97
VSX1-201ENST00000376707 HCLS1P14317 486 aaPredicted RBP27.34■■□□□ 1.97
VSX1-201ENST00000376707 EIF6P56537 245 aaKnown RBP27.34■■□□□ 1.97
VSX1-201ENST00000376707 LARGE2Q8N3Y3 721 aa27.34■■□□□ 1.97
VSX1-201ENST00000376707 PLBD2Q8NHP8 589 aa27.34■■□□□ 1.97
VSX1-201ENST00000376707 SH3TC1Q8TE82 1336 aa27.34■■□□□ 1.97
VSX1-201ENST00000376707 ANKRD36CQ5JPF3 1778 aa27.33■■□□□ 1.97
VSX1-201ENST00000376707 CALD1Q05682 793 aaKnown RBP27.33■■□□□ 1.97
VSX1-201ENST00000376707 EAPPQ56P03 285 aaPredicted RBP27.33■■□□□ 1.97
VSX1-201ENST00000376707 SLC51AQ86UW1 340 aa27.33■■□□□ 1.97
VSX1-201ENST00000376707 GPC2Q8N158 579 aa27.33■■□□□ 1.97
VSX1-201ENST00000376707 ABCC4O15439 1325 aa27.33■■□□□ 1.97
VSX1-201ENST00000376707 SCN4AP35499 1836 aa27.32■■□□□ 1.96
VSX1-201ENST00000376707 ANKRD13DQ6ZTN6 518 aa27.32■■□□□ 1.96
VSX1-201ENST00000376707 HYPKQ9NX55 129 aa27.32■■□□□ 1.96
VSX1-201ENST00000376707 ATP6V0A2Q9Y487 856 aa27.32■■□□□ 1.96
VSX1-201ENST00000376707 EPHX2P34913 555 aa27.31■■□□□ 1.96
VSX1-201ENST00000376707 IFT57Q9NWB7 429 aa27.31■■□□□ 1.96
VSX1-201ENST00000376707 ZNF853P0CG23 659 aa27.3■■□□□ 1.96
VSX1-201ENST00000376707 GNAI1P63096 354 aa27.3■■□□□ 1.96
VSX1-201ENST00000376707 DDX46Q7L014 1031 aaKnown RBP27.3■■□□□ 1.96
VSX1-201ENST00000376707 GJA3Q9Y6H8 435 aa27.3■■□□□ 1.96
VSX1-201ENST00000376707 BBOX1O75936 387 aa27.29■■□□□ 1.96
VSX1-201ENST00000376707 PNMA8AQ86V59 439 aaPredicted RBP27.29■■□□□ 1.96
VSX1-201ENST00000376707 ZNF428Q96B54 188 aa27.29■■□□□ 1.96
VSX1-201ENST00000376707 CLEC11AQ9Y240 323 aa27.29■■□□□ 1.96
VSX1-201ENST00000376707 COL4A5P29400 1685 aa27.29■■□□□ 1.96
VSX1-201ENST00000376707 PPIP5K2O43314 1243 aa27.28■■□□□ 1.96
VSX1-201ENST00000376707 NIM1KQ8IY84 436 aa27.28■■□□□ 1.96
VSX1-201ENST00000376707 CREBZFQ9NS37 354 aa27.28■■□□□ 1.96
VSX1-201ENST00000376707 SUPT20HQ8NEM7 779 aa27.27■■□□□ 1.96
VSX1-201ENST00000376707 ATP5J2-PTCD1G3V325 749 aa27.26■■□□□ 1.95
VSX1-201ENST00000376707 AOC3Q16853 763 aa27.26■■□□□ 1.95
VSX1-201ENST00000376707 SP8Q8IXZ3 490 aa27.26■■□□□ 1.95
VSX1-201ENST00000376707 ISCA1Q9BUE6 129 aa27.26■■□□□ 1.95
VSX1-201ENST00000376707 VPS33BQ9H267 617 aa27.26■■□□□ 1.95
VSX1-201ENST00000376707 ELL2O00472 640 aaPredicted RBP27.25■■□□□ 1.95
VSX1-201ENST00000376707 LMOD1P29536 600 aaPredicted RBP27.25■■□□□ 1.95
VSX1-201ENST00000376707 GRAPQ13588 217 aa27.25■■□□□ 1.95
VSX1-201ENST00000376707 DPP8Q6V1X1 898 aaPredicted RBP27.25■■□□□ 1.95
VSX1-201ENST00000376707 GRAPLQ8TC17 118 aaPredicted RBP27.25■■□□□ 1.95
VSX1-201ENST00000376707 PASKQ96RG2 1323 aa27.24■■□□□ 1.95
VSX1-201ENST00000376707 MPNDQ8N594 471 aa27.24■■□□□ 1.95
VSX1-201ENST00000376707 FAM89AQ96GI7 184 aa27.24■■□□□ 1.95
VSX1-201ENST00000376707 ZNF316A6NFI3 1004 aaPredicted RBP27.23■■□□□ 1.95
VSX1-201ENST00000376707 GOLGA2Q08379 1002 aa27.23■■□□□ 1.95
VSX1-201ENST00000376707 RIC3Q7Z5B4 369 aa27.23■■□□□ 1.95
VSX1-201ENST00000376707 RTFDC1Q9BY42 306 aaPredicted RBP27.23■■□□□ 1.95
VSX1-201ENST00000376707 LAMB2P55268 1798 aa27.22■■□□□ 1.95
VSX1-201ENST00000376707 MKRN1Q9UHC7 482 aaKnown RBP27.22■■□□□ 1.95
VSX1-201ENST00000376707 ITGBL1O95965 494 aaPredicted RBP27.21■■□□□ 1.95
VSX1-201ENST00000376707 TMC4Q7Z404 712 aa27.21■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms