RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 NTSR2O95665 410 aa27.49■■□□□ 1.99
VSX1-201ENST00000376707 HOXA10P31260 410 aaPredicted RBP27.47■■□□□ 1.99
VSX1-201ENST00000376707 AIMP1Q12904 312 aaKnown RBP27.47■■□□□ 1.99
VSX1-201ENST00000376707 KLRG1Q96E93 195 aa27.47■■□□□ 1.99
VSX1-201ENST00000376707 KRT24Q2M2I5 525 aa27.46■■□□□ 1.99
VSX1-201ENST00000376707 COPS6Q7L5N1 327 aa27.46■■□□□ 1.99
VSX1-201ENST00000376707 SYNE4Q8N205 404 aa27.46■■□□□ 1.99
VSX1-201ENST00000376707 XAGE3Q8WTP9 111 aa27.46■■□□□ 1.99
VSX1-201ENST00000376707 RBM17Q96I25 401 aaKnown RBP27.46■■□□□ 1.99
VSX1-201ENST00000376707 CC2D2BQ6DHV5 1058 aa27.45■■□□□ 1.98
VSX1-201ENST00000376707 UTP14AQ9BVJ6 771 aaKnown RBP27.45■■□□□ 1.98
VSX1-201ENST00000376707 DDX21Q9NR30 783 aaKnown RBP eCLIP27.45■■□□□ 1.98
VSX1-201ENST00000376707 IQCA1LA6NCM1 817 aa27.44■■□□□ 1.98
VSX1-201ENST00000376707 IARSP41252 1262 aaKnown RBP27.44■■□□□ 1.98
VSX1-201ENST00000376707 HSP90AB3PQ58FF7 597 aa27.44■■□□□ 1.98
VSX1-201ENST00000376707 NLRP3Q96P20 1036 aa27.44■■□□□ 1.98
VSX1-201ENST00000376707 CRAMP1Q96RY5 1269 aa27.44■■□□□ 1.98
VSX1-201ENST00000376707 PSMD1Q99460 953 aa27.43■■□□□ 1.98
VSX1-201ENST00000376707 C3orf67Q6ZVT6 689 aa27.42■■□□□ 1.98
VSX1-201ENST00000376707 L3MBTL3Q96JM7 780 aaPredicted RBP27.42■■□□□ 1.98
VSX1-201ENST00000376707 ZNF541Q9H0D2 1346 aa27.41■■□□□ 1.98
VSX1-201ENST00000376707 GRIPAP1Q4V328 841 aa27.41■■□□□ 1.98
VSX1-201ENST00000376707 HDGFL1Q5TGJ6 251 aa27.41■■□□□ 1.98
VSX1-201ENST00000376707 CHADLQ6NUI6 762 aa27.41■■□□□ 1.98
VSX1-201ENST00000376707 CHPF2Q9P2E5 772 aa27.41■■□□□ 1.98
VSX1-201ENST00000376707 SNED1Q8TER0 1413 aa27.41■■□□□ 1.98
VSX1-201ENST00000376707 RNF123Q5XPI4 1314 aa27.41■■□□□ 1.98
VSX1-201ENST00000376707 TCERG1O14776 1098 aaKnown RBP27.4■■□□□ 1.98
VSX1-201ENST00000376707 PPEF1O14829 653 aaPredicted RBP27.4■■□□□ 1.98
VSX1-201ENST00000376707 HOXB7P09629 217 aa27.4■■□□□ 1.98
VSX1-201ENST00000376707 SLC10A5Q5PT55 438 aa27.4■■□□□ 1.98
VSX1-201ENST00000376707 JDP2Q8WYK2 163 aa27.4■■□□□ 1.98
VSX1-201ENST00000376707 CFAP44Q96MT7 982 aa27.4■■□□□ 1.98
VSX1-201ENST00000376707 NLRP10Q86W26 655 aa27.39■■□□□ 1.98
VSX1-201ENST00000376707 POTEIP0CG38 1075 aa27.38■■□□□ 1.97
VSX1-201ENST00000376707 POTEJP0CG39 1038 aa27.38■■□□□ 1.97
VSX1-201ENST00000376707 TCIRG1Q13488 830 aa27.38■■□□□ 1.97
VSX1-201ENST00000376707 TMX4Q9H1E5 349 aaPredicted RBP27.38■■□□□ 1.97
VSX1-201ENST00000376707 TAF1DQ9H5J8 278 aaPredicted RBP27.38■■□□□ 1.97
VSX1-201ENST00000376707 FZD9O00144 591 aa27.37■■□□□ 1.97
VSX1-201ENST00000376707 JMYQ8N9B5 988 aa27.37■■□□□ 1.97
VSX1-201ENST00000376707 IFFO2Q5TF58 517 aa27.36■■□□□ 1.97
VSX1-201ENST00000376707 DBF4Q9UBU7 674 aaPredicted RBP27.36■■□□□ 1.97
VSX1-201ENST00000376707 TRMT112Q9UI30 125 aaKnown RBP27.36■■□□□ 1.97
VSX1-201ENST00000376707 HACL1Q9UJ83 578 aa27.36■■□□□ 1.97
VSX1-201ENST00000376707 APAF1O14727 1248 aa27.35■■□□□ 1.97
VSX1-201ENST00000376707 DUSP27Q5VZP5 1158 aa27.35■■□□□ 1.97
VSX1-201ENST00000376707 LDHDQ86WU2 507 aa27.35■■□□□ 1.97
VSX1-201ENST00000376707 MBIPQ9NS73 344 aa27.35■■□□□ 1.97
VSX1-201ENST00000376707 HCLS1P14317 486 aaPredicted RBP27.34■■□□□ 1.97
VSX1-201ENST00000376707 EIF6P56537 245 aaKnown RBP27.34■■□□□ 1.97
VSX1-201ENST00000376707 LARGE2Q8N3Y3 721 aa27.34■■□□□ 1.97
VSX1-201ENST00000376707 PLBD2Q8NHP8 589 aa27.34■■□□□ 1.97
VSX1-201ENST00000376707 SH3TC1Q8TE82 1336 aa27.34■■□□□ 1.97
VSX1-201ENST00000376707 ANKRD36CQ5JPF3 1778 aa27.33■■□□□ 1.97
VSX1-201ENST00000376707 CALD1Q05682 793 aaKnown RBP27.33■■□□□ 1.97
VSX1-201ENST00000376707 EAPPQ56P03 285 aaPredicted RBP27.33■■□□□ 1.97
VSX1-201ENST00000376707 SLC51AQ86UW1 340 aa27.33■■□□□ 1.97
VSX1-201ENST00000376707 GPC2Q8N158 579 aa27.33■■□□□ 1.97
VSX1-201ENST00000376707 ABCC4O15439 1325 aa27.33■■□□□ 1.97
VSX1-201ENST00000376707 SCN4AP35499 1836 aa27.32■■□□□ 1.96
VSX1-201ENST00000376707 ANKRD13DQ6ZTN6 518 aa27.32■■□□□ 1.96
VSX1-201ENST00000376707 HYPKQ9NX55 129 aa27.32■■□□□ 1.96
VSX1-201ENST00000376707 ATP6V0A2Q9Y487 856 aa27.32■■□□□ 1.96
VSX1-201ENST00000376707 EPHX2P34913 555 aa27.31■■□□□ 1.96
VSX1-201ENST00000376707 IFT57Q9NWB7 429 aa27.31■■□□□ 1.96
VSX1-201ENST00000376707 ZNF853P0CG23 659 aa27.3■■□□□ 1.96
VSX1-201ENST00000376707 GNAI1P63096 354 aa27.3■■□□□ 1.96
VSX1-201ENST00000376707 DDX46Q7L014 1031 aaKnown RBP27.3■■□□□ 1.96
VSX1-201ENST00000376707 GJA3Q9Y6H8 435 aa27.3■■□□□ 1.96
VSX1-201ENST00000376707 BBOX1O75936 387 aa27.29■■□□□ 1.96
VSX1-201ENST00000376707 PNMA8AQ86V59 439 aaPredicted RBP27.29■■□□□ 1.96
VSX1-201ENST00000376707 ZNF428Q96B54 188 aa27.29■■□□□ 1.96
VSX1-201ENST00000376707 CLEC11AQ9Y240 323 aa27.29■■□□□ 1.96
VSX1-201ENST00000376707 COL4A5P29400 1685 aa27.29■■□□□ 1.96
VSX1-201ENST00000376707 PPIP5K2O43314 1243 aa27.28■■□□□ 1.96
VSX1-201ENST00000376707 NIM1KQ8IY84 436 aa27.28■■□□□ 1.96
VSX1-201ENST00000376707 CREBZFQ9NS37 354 aa27.28■■□□□ 1.96
VSX1-201ENST00000376707 SUPT20HQ8NEM7 779 aa27.27■■□□□ 1.96
VSX1-201ENST00000376707 ATP5J2-PTCD1G3V325 749 aa27.26■■□□□ 1.95
VSX1-201ENST00000376707 AOC3Q16853 763 aa27.26■■□□□ 1.95
VSX1-201ENST00000376707 SP8Q8IXZ3 490 aa27.26■■□□□ 1.95
VSX1-201ENST00000376707 ISCA1Q9BUE6 129 aa27.26■■□□□ 1.95
VSX1-201ENST00000376707 VPS33BQ9H267 617 aa27.26■■□□□ 1.95
VSX1-201ENST00000376707 ELL2O00472 640 aaPredicted RBP27.25■■□□□ 1.95
VSX1-201ENST00000376707 LMOD1P29536 600 aaPredicted RBP27.25■■□□□ 1.95
VSX1-201ENST00000376707 GRAPQ13588 217 aa27.25■■□□□ 1.95
VSX1-201ENST00000376707 DPP8Q6V1X1 898 aaPredicted RBP27.25■■□□□ 1.95
VSX1-201ENST00000376707 GRAPLQ8TC17 118 aaPredicted RBP27.25■■□□□ 1.95
VSX1-201ENST00000376707 PASKQ96RG2 1323 aa27.24■■□□□ 1.95
VSX1-201ENST00000376707 MPNDQ8N594 471 aa27.24■■□□□ 1.95
VSX1-201ENST00000376707 FAM89AQ96GI7 184 aa27.24■■□□□ 1.95
VSX1-201ENST00000376707 ZNF316A6NFI3 1004 aaPredicted RBP27.23■■□□□ 1.95
VSX1-201ENST00000376707 GOLGA2Q08379 1002 aa27.23■■□□□ 1.95
VSX1-201ENST00000376707 RIC3Q7Z5B4 369 aa27.23■■□□□ 1.95
VSX1-201ENST00000376707 RTFDC1Q9BY42 306 aaPredicted RBP27.23■■□□□ 1.95
VSX1-201ENST00000376707 LAMB2P55268 1798 aa27.22■■□□□ 1.95
VSX1-201ENST00000376707 MKRN1Q9UHC7 482 aaKnown RBP27.22■■□□□ 1.95
VSX1-201ENST00000376707 ITGBL1O95965 494 aaPredicted RBP27.21■■□□□ 1.95
VSX1-201ENST00000376707 TMC4Q7Z404 712 aa27.21■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms