RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 ITGBL1O95965 494 aaPredicted RBP18.69■□□□□ 0.58
PTCH1-202ENST00000375271 NUTM1Q86Y26 1132 aa18.69■□□□□ 0.58
PTCH1-202ENST00000375271 RBM17Q96I25 401 aaKnown RBP18.69■□□□□ 0.58
PTCH1-202ENST00000375271 RRP7AQ9Y3A4 280 aaKnown RBP18.69■□□□□ 0.58
PTCH1-202ENST00000375271 ERVV-1B6SEH8 477 aa18.68■□□□□ 0.58
PTCH1-202ENST00000375271 PPP2R1AP30153 589 aa18.68■□□□□ 0.58
PTCH1-202ENST00000375271 LBX1P52954 281 aa18.68■□□□□ 0.58
PTCH1-202ENST00000375271 GRM1Q13255 1194 aa18.68■□□□□ 0.58
PTCH1-202ENST00000375271 MIS18AQ9NYP9 233 aa18.68■□□□□ 0.58
PTCH1-202ENST00000375271 MAP3K15Q6ZN16 1313 aa18.68■□□□□ 0.58
PTCH1-202ENST00000375271 RASSF10A6NK89 507 aa18.67■□□□□ 0.58
PTCH1-202ENST00000375271 MYL6BP14649 208 aa18.67■□□□□ 0.58
PTCH1-202ENST00000375271 GPTP24298 496 aa18.67■□□□□ 0.58
PTCH1-202ENST00000375271 ECE1P42892 770 aa18.67■□□□□ 0.58
PTCH1-202ENST00000375271 NIM1KQ8IY84 436 aa18.67■□□□□ 0.58
PTCH1-202ENST00000375271 WBP1LQ9NX94 342 aa18.67■□□□□ 0.58
PTCH1-202ENST00000375271 WDR33Q9C0J8 1336 aaKnown RBP18.67■□□□□ 0.58
PTCH1-202ENST00000375271 ABCC12Q96J65 1359 aa18.67■□□□□ 0.58
PTCH1-202ENST00000375271 TCERG1O14776 1098 aaKnown RBP18.66■□□□□ 0.58
PTCH1-202ENST00000375271 PPEF1O14829 653 aaPredicted RBP18.66■□□□□ 0.58
PTCH1-202ENST00000375271 CRY2Q49AN0 593 aa18.66■□□□□ 0.58
PTCH1-202ENST00000375271 PPP1R42Q7Z4L9 355 aa18.66■□□□□ 0.58
PTCH1-202ENST00000375271 ZBTB3Q9H5J0 574 aa18.66■□□□□ 0.58
PTCH1-202ENST00000375271 MAPK8IP3Q9UPT6 1336 aa18.66■□□□□ 0.58
PTCH1-202ENST00000375271 PNNQ9H307 717 aaKnown RBP18.65■□□□□ 0.58
PTCH1-202ENST00000375271 DDX21Q9NR30 783 aaKnown RBP eCLIP18.65■□□□□ 0.58
PTCH1-202ENST00000375271 ADAMTSL1Q8N6G6 1762 aa18.65■□□□□ 0.58
PTCH1-202ENST00000375271 NUP98P52948 1817 aa18.64■□□□□ 0.57
PTCH1-202ENST00000375271 IBTKQ9P2D0 1353 aaPredicted RBP18.64■□□□□ 0.57
PTCH1-202ENST00000375271 PPIP5K2O43314 1243 aa18.63■□□□□ 0.57
PTCH1-202ENST00000375271 USP50Q70EL3 339 aaPredicted RBP18.63■□□□□ 0.57
PTCH1-202ENST00000375271 NLRP3Q96P20 1036 aa18.63■□□□□ 0.57
PTCH1-202ENST00000375271 PARP10Q53GL7 1025 aa18.62■□□□□ 0.57
PTCH1-202ENST00000375271 TTLL7Q6ZT98 887 aa18.62■□□□□ 0.57
PTCH1-202ENST00000375271 SUPT20HQ8NEM7 779 aa18.62■□□□□ 0.57
PTCH1-202ENST00000375271 CRAMP1Q96RY5 1269 aa18.62■□□□□ 0.57
PTCH1-202ENST00000375271 RIC1Q4ADV7 1423 aa18.62■□□□□ 0.57
PTCH1-202ENST00000375271 KDM3BQ7LBC6 1761 aa18.61■□□□□ 0.57
PTCH1-202ENST00000375271 HSPA8P11142 646 aaKnown RBP18.61■□□□□ 0.57
PTCH1-202ENST00000375271 HOXA10P31260 410 aaPredicted RBP18.61■□□□□ 0.57
PTCH1-202ENST00000375271 CAPNS2Q96L46 248 aa18.61■□□□□ 0.57
PTCH1-202ENST00000375271 ERBB4Q15303 1308 aa18.6■□□□□ 0.57
PTCH1-202ENST00000375271 EPS15P42566 896 aa18.6■□□□□ 0.57
PTCH1-202ENST00000375271 EIF4A1P60842 406 aaKnown RBP18.6■□□□□ 0.57
PTCH1-202ENST00000375271 SUSD4Q5VX71 490 aa18.6■□□□□ 0.57
PTCH1-202ENST00000375271 DLG5Q8TDM6 1919 aa18.59■□□□□ 0.57
PTCH1-202ENST00000375271 UBN2Q6ZU65 1347 aa18.59■□□□□ 0.57
PTCH1-202ENST00000375271 SCNN1DP51172 638 aa18.59■□□□□ 0.57
PTCH1-202ENST00000375271 NFE2L2Q16236 605 aa18.59■□□□□ 0.57
PTCH1-202ENST00000375271 GIGYF2Q6Y7W6 1299 aaKnown RBP18.59■□□□□ 0.57
PTCH1-202ENST00000375271 AOC3Q16853 763 aa18.58■□□□□ 0.56
PTCH1-202ENST00000375271 ABHD8Q96I13 439 aa18.58■□□□□ 0.56
PTCH1-202ENST00000375271 GPR101Q96P66 508 aaPredicted RBP18.58■□□□□ 0.56
PTCH1-202ENST00000375271 UTP14AQ9BVJ6 771 aaKnown RBP18.58■□□□□ 0.56
PTCH1-202ENST00000375271 BCL2L13Q9BXK5 485 aa18.58■□□□□ 0.56
PTCH1-202ENST00000375271 VPS33BQ9H267 617 aa18.58■□□□□ 0.56
PTCH1-202ENST00000375271 ADARB2Q9NS39 739 aaKnown RBP18.58■□□□□ 0.56
PTCH1-202ENST00000375271 TSPYL4Q9UJ04 414 aa18.58■□□□□ 0.56
PTCH1-202ENST00000375271 NTSR2O95665 410 aa18.57■□□□□ 0.56
PTCH1-202ENST00000375271 CYP4F22Q6NT55 531 aa18.57■□□□□ 0.56
PTCH1-202ENST00000375271 DPP8Q6V1X1 898 aaPredicted RBP18.57■□□□□ 0.56
PTCH1-202ENST00000375271 TRPM7Q96QT4 1865 aa18.56■□□□□ 0.56
PTCH1-202ENST00000375271 EIF2S2P20042 333 aaKnown RBP18.56■□□□□ 0.56
PTCH1-202ENST00000375271 HSP90AB3PQ58FF7 597 aa18.56■□□□□ 0.56
PTCH1-202ENST00000375271 ZNF34Q8IZ26 560 aa18.56■□□□□ 0.56
PTCH1-202ENST00000375271 THUMPD2Q9BTF0 503 aaKnown RBP18.56■□□□□ 0.56
PTCH1-202ENST00000375271 ZNRF3Q9ULT6 936 aa18.56■□□□□ 0.56
PTCH1-202ENST00000375271 ATP6V0A2Q9Y487 856 aa18.56■□□□□ 0.56
PTCH1-202ENST00000375271 SNED1Q8TER0 1413 aa18.56■□□□□ 0.56
PTCH1-202ENST00000375271 CCDC85CA6NKD9 419 aa18.55■□□□□ 0.56
PTCH1-202ENST00000375271 CFAP44Q96MT7 982 aa18.55■□□□□ 0.56
PTCH1-202ENST00000375271 ZNF408Q9H9D4 720 aa18.55■□□□□ 0.56
PTCH1-202ENST00000375271 GPRC5DQ9NZD1 345 aa18.55■□□□□ 0.56
PTCH1-202ENST00000375271 COL4A5P29400 1685 aa18.54■□□□□ 0.56
PTCH1-202ENST00000375271 TRAF5O00463 557 aa18.54■□□□□ 0.56
PTCH1-202ENST00000375271 CELF2O95319 508 aaKnown RBP18.54■□□□□ 0.56
PTCH1-202ENST00000375271 TNIP1Q15025 636 aa18.54■□□□□ 0.56
PTCH1-202ENST00000375271 DDX46Q7L014 1031 aaKnown RBP18.54■□□□□ 0.56
PTCH1-202ENST00000375271 TLL2Q9Y6L7 1015 aa18.54■□□□□ 0.56
PTCH1-202ENST00000375271 LTBP1Q14766 1721 aa18.54■□□□□ 0.56
PTCH1-202ENST00000375271 CA12O43570 354 aa18.53■□□□□ 0.56
PTCH1-202ENST00000375271 CIAPIN1Q6FI81 312 aa18.53■□□□□ 0.56
PTCH1-202ENST00000375271 MPNDQ8N594 471 aa18.53■□□□□ 0.56
PTCH1-202ENST00000375271 ABCC4O15439 1325 aa18.52■□□□□ 0.56
PTCH1-202ENST00000375271 CDHR2Q9BYE9 1310 aa18.52■□□□□ 0.56
PTCH1-202ENST00000375271 BBOX1O75936 387 aa18.52■□□□□ 0.56
PTCH1-202ENST00000375271 MAP2K2P36507 400 aa18.52■□□□□ 0.56
PTCH1-202ENST00000375271 GMPSP49915 693 aaPredicted RBP18.52■□□□□ 0.56
PTCH1-202ENST00000375271 FMR1Q06787 632 aaKnown RBP eCLIP18.52■□□□□ 0.56
PTCH1-202ENST00000375271 LMOD3Q0VAK6 560 aa18.52■□□□□ 0.56
PTCH1-202ENST00000375271 FAM161AQ3B820 660 aa18.52■□□□□ 0.56
PTCH1-202ENST00000375271 THSD7BQ9C0I4 1608 aa18.52■□□□□ 0.55
PTCH1-202ENST00000375271 AIMP1Q12904 312 aaKnown RBP18.51■□□□□ 0.55
PTCH1-202ENST00000375271 C3orf67Q6ZVT6 689 aa18.51■□□□□ 0.55
PTCH1-202ENST00000375271 H7C1D1 291 aa18.5■□□□□ 0.55
PTCH1-202ENST00000375271 CXCL9Q07325 125 aa18.5■□□□□ 0.55
PTCH1-202ENST00000375271 CST9Q5W186 159 aa18.5■□□□□ 0.55
PTCH1-202ENST00000375271 SP8Q8IXZ3 490 aa18.5■□□□□ 0.55
PTCH1-202ENST00000375271 PLEKHF1Q96S99 279 aa18.5■□□□□ 0.55
PTCH1-202ENST00000375271 TRMT112Q9UI30 125 aaKnown RBP18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms