RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 ERBB3P21860 1342 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 FAM200BP0CF97 657 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 COL19A1Q14993 1142 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.01□□□□□ -1.61
MCF2-203ENST00000370576 NRXN2Q9P2S2 1712 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 KCPQ6ZWJ8 1503 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 TNS3Q68CZ2 1445 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 FYB1O15117 783 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 SCP2P22307 547 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 MAP9Q49MG5 647 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 GDPD2Q9HCC8 539 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 MAP3K20Q9NYL2 800 aaKnown RBP5.01□□□□□ -1.61
MCF2-203ENST00000370576 TTF2Q9UNY4 1162 aaKnown RBP5.01□□□□□ -1.61
MCF2-203ENST00000370576 ANKRD33BA6NCL7 494 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 KIF4AO95239 1232 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 ZNF853P0CG23 659 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 COPB2P35606 906 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 DDX10Q13206 875 aaKnown RBP5.01□□□□□ -1.61
MCF2-203ENST00000370576 ZNF280DQ6N043 979 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 PDZRN3Q9UPQ7 1066 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 CEMIPQ8WUJ3 1361 aa5.01□□□□□ -1.61
MCF2-203ENST00000370576 TNS2Q63HR2 1409 aa5□□□□□ -1.61
MCF2-203ENST00000370576 CEP63Q96MT8 703 aa5□□□□□ -1.61
MCF2-203ENST00000370576 SERINC2Q96SA4 455 aa5□□□□□ -1.61
MCF2-203ENST00000370576 SPC25Q9HBM1 224 aa5□□□□□ -1.61
MCF2-203ENST00000370576 CEP126Q9P2H0 1117 aa5□□□□□ -1.61
MCF2-203ENST00000370576 COL4A3BPQ9Y5P4 624 aa5□□□□□ -1.61
MCF2-203ENST00000370576 hCG_2014768A0A024R1R8 64 aa5□□□□□ -1.61
MCF2-203ENST00000370576 ANP32CO43423 234 aa5□□□□□ -1.61
MCF2-203ENST00000370576 PDIA6Q15084 440 aa5□□□□□ -1.61
MCF2-203ENST00000370576 ENOX1Q8TC92 643 aaKnown RBP5□□□□□ -1.61
MCF2-203ENST00000370576 BORCS6Q96GS4 357 aa5□□□□□ -1.61
MCF2-203ENST00000370576 APBA2Q99767 749 aa5□□□□□ -1.61
MCF2-203ENST00000370576 ENAMQ9NRM1 1142 aa5□□□□□ -1.61
MCF2-203ENST00000370576 MSH6P52701 1360 aa5□□□□□ -1.61
MCF2-203ENST00000370576 DOT1LQ8TEK3 1739 aa5□□□□□ -1.61
MCF2-203ENST00000370576 TNS1Q9HBL0 1735 aaKnown RBP5□□□□□ -1.61
MCF2-203ENST00000370576 DEKP35659 375 aaKnown RBP5□□□□□ -1.61
MCF2-203ENST00000370576 SIM2Q14190 667 aaPredicted RBP5□□□□□ -1.61
MCF2-203ENST00000370576 TUSC1Q2TAM9 212 aa5□□□□□ -1.61
MCF2-203ENST00000370576 PHOX2BQ99453 314 aa5□□□□□ -1.61
MCF2-203ENST00000370576 ZNF69Q9UC07 566 aa5□□□□□ -1.61
MCF2-203ENST00000370576 LRRC37AA6NMS7 1700 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 PALM3A6NDB9 673 aaPredicted RBP4.99□□□□□ -1.61
MCF2-203ENST00000370576 SERINC3Q13530 473 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 PUS10Q3MIT2 529 aaKnown RBP4.99□□□□□ -1.61
MCF2-203ENST00000370576 CCDC146Q8IYE0 955 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 TMC2Q8TDI7 906 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 RPS6KC1Q96S38 1066 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 SOS1Q07889 1333 aaPredicted RBP4.99□□□□□ -1.61
MCF2-203ENST00000370576 IGSF1Q8N6C5 1336 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 PPP1R3GB7ZBB8 358 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 POU3F3P20264 500 aaPredicted RBP4.99□□□□□ -1.61
MCF2-203ENST00000370576 IL13P35225 146 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 SETDB1Q15047 1291 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 HSP90AB2PQ58FF8 381 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 DHX38Q92620 1227 aaKnown RBP4.99□□□□□ -1.61
MCF2-203ENST00000370576 ZNF622Q969S3 477 aaKnown RBP eCLIP4.99□□□□□ -1.61
MCF2-203ENST00000370576 PRAM1Q96QH2 718 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 CDK19Q9BWU1 502 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 BACH2Q9BYV9 841 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 PDGFRBP09619 1106 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 CT47B1P0C2W7 299 aaPredicted RBP4.99□□□□□ -1.61
MCF2-203ENST00000370576 MAPRE1Q15691 268 aaKnown RBP4.99□□□□□ -1.61
MCF2-203ENST00000370576 FAM161AQ3B820 660 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 ANKRD23Q86SG2 305 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 DDX27Q96GQ7 796 aaKnown RBP4.99□□□□□ -1.61
MCF2-203ENST00000370576 ZNF700Q9H0M5 742 aa4.99□□□□□ -1.61
MCF2-203ENST00000370576 IFRD1O00458 451 aaPredicted RBP4.98□□□□□ -1.61
MCF2-203ENST00000370576 IGHDP01880 384 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 CXorf38Q8TB03 319 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 BABAM1Q9NWV8 329 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 SOS2Q07890 1332 aaPredicted RBP4.98□□□□□ -1.61
MCF2-203ENST00000370576 TTC21BQ7Z4L5 1316 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 C4AP0C0L4 1744 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 C4BP0C0L5 1744 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 CCDC189A1A4V9 331 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 GOLGA6CA6NDK9 693 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 GOLGA6BA6NDN3 693 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 SH3BP5O60239 455 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 GOLGA6DP0CG33 693 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 SF3B2Q13435 895 aaKnown RBP4.98□□□□□ -1.61
MCF2-203ENST00000370576 TTC39BQ5VTQ0 682 aaPredicted RBP4.98□□□□□ -1.61
MCF2-203ENST00000370576 IFT57Q9NWB7 429 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 GOLGA6AQ9NYA3 693 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 TBC1D2BQ9UPU7 963 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 CCDC61Q9Y6R9 512 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 KIAA0232Q92628 1395 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 TNFRSF10BO14763 440 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 HOXA2O43364 376 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 SRGNP10124 158 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 VPS72Q15906 364 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 C1QTNF12Q5T7M4 302 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 ZNF467Q7Z7K2 595 aaPredicted RBP4.98□□□□□ -1.61
MCF2-203ENST00000370576 WDR63Q8IWG1 891 aa4.98□□□□□ -1.61
MCF2-203ENST00000370576 LSM14AQ8ND56 463 aaKnown RBP4.98□□□□□ -1.61
MCF2-203ENST00000370576 DMGDHQ9UI17 866 aaKnown RBP4.98□□□□□ -1.61
MCF2-203ENST00000370576 AFDNP55196 1824 aaKnown RBP4.97□□□□□ -1.61
MCF2-203ENST00000370576 DLEC1Q9Y238 1755 aa4.97□□□□□ -1.61
MCF2-203ENST00000370576 TMEM95Q3KNT9 176 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms