RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 CCDC192P0DO97 292 aa13.55□□□□□ -0.24
SYNE1-204ENST00000367248 BAG3O95817 575 aa13.55□□□□□ -0.24
SYNE1-204ENST00000367248 IGHDP01880 384 aa13.55□□□□□ -0.24
SYNE1-204ENST00000367248 TTC16Q8NEE8 873 aa13.55□□□□□ -0.24
SYNE1-204ENST00000367248 SEPT11Q9NVA2 429 aaKnown RBP13.55□□□□□ -0.24
SYNE1-204ENST00000367248 HAND2P61296 217 aa13.55□□□□□ -0.24
SYNE1-204ENST00000367248 SMC2O95347 1197 aa13.55□□□□□ -0.24
SYNE1-204ENST00000367248 UTP14AQ9BVJ6 771 aaKnown RBP13.55□□□□□ -0.24
SYNE1-204ENST00000367248 TTC22Q5TAA0 569 aa13.55□□□□□ -0.24
SYNE1-204ENST00000367248 TPTE2Q6XPS3 522 aa13.55□□□□□ -0.24
SYNE1-204ENST00000367248 EIF2AK4Q9P2K8 1649 aaKnown RBP13.55□□□□□ -0.24
SYNE1-204ENST00000367248 COL17A1Q9UMD9 1497 aaPredicted RBP13.54□□□□□ -0.24
SYNE1-204ENST00000367248 IL13P35225 146 aa13.54□□□□□ -0.24
SYNE1-204ENST00000367248 DNMT1P26358 1616 aaKnown RBP13.54□□□□□ -0.24
SYNE1-204ENST00000367248 FAM182BQ5T319 152 aa13.54□□□□□ -0.24
SYNE1-204ENST00000367248 TSHZ3Q63HK5 1081 aa13.54□□□□□ -0.24
SYNE1-204ENST00000367248 IFIT3O14879 490 aaKnown RBP13.54□□□□□ -0.24
SYNE1-204ENST00000367248 STIM1Q13586 685 aa13.54□□□□□ -0.24
SYNE1-204ENST00000367248 HLA-DOAP06340 250 aa13.54□□□□□ -0.24
SYNE1-204ENST00000367248 BAG6P46379 1132 aa13.54□□□□□ -0.24
SYNE1-204ENST00000367248 SLC12A7Q9Y666 1083 aa13.54□□□□□ -0.24
SYNE1-204ENST00000367248 NF2P35240 595 aa13.54□□□□□ -0.24
SYNE1-204ENST00000367248 TNIP1Q15025 636 aa13.54□□□□□ -0.24
SYNE1-204ENST00000367248 LARP6Q9BRS8 491 aaKnown RBP13.54□□□□□ -0.24
SYNE1-204ENST00000367248 UBA5Q9GZZ9 404 aa13.54□□□□□ -0.24
SYNE1-204ENST00000367248 DDX21Q9NR30 783 aaKnown RBP eCLIP13.54□□□□□ -0.24
SYNE1-204ENST00000367248 DACH1Q9UI36 760 aa13.54□□□□□ -0.24
SYNE1-204ENST00000367248 LIMCH1Q9UPQ0 1083 aa13.54□□□□□ -0.24
SYNE1-204ENST00000367248 SOS1Q07889 1333 aaPredicted RBP13.53□□□□□ -0.24
SYNE1-204ENST00000367248 PCDHB15Q9Y5E8 787 aa13.53□□□□□ -0.24
SYNE1-204ENST00000367248 WDR70Q9NW82 654 aa13.53□□□□□ -0.24
SYNE1-204ENST00000367248 HMGN5P82970 282 aaKnown RBP13.53□□□□□ -0.24
SYNE1-204ENST00000367248 VSIG10Q8N0Z9 540 aa13.53□□□□□ -0.24
SYNE1-204ENST00000367248 ZNF526Q8TF50 670 aaPredicted RBP13.53□□□□□ -0.24
SYNE1-204ENST00000367248 PATL2C9JE40 543 aaKnown RBP13.53□□□□□ -0.24
SYNE1-204ENST00000367248 TBC1D9Q6ZT07 1266 aa13.53□□□□□ -0.24
SYNE1-204ENST00000367248 CUL5Q93034 780 aa13.53□□□□□ -0.24
SYNE1-204ENST00000367248 TSPY2A6NKD2 308 aa13.53□□□□□ -0.24
SYNE1-204ENST00000367248 GUCY1B3Q02153 619 aa13.53□□□□□ -0.24
SYNE1-204ENST00000367248 GOLGA8AA7E2F4 631 aa13.52□□□□□ -0.24
SYNE1-204ENST00000367248 GOLGA8BA8MQT2 603 aa13.52□□□□□ -0.24
SYNE1-204ENST00000367248 CWF19L2Q2TBE0 894 aaKnown RBP13.52□□□□□ -0.24
SYNE1-204ENST00000367248 ZFYVE16Q7Z3T8 1539 aa13.52□□□□□ -0.24
SYNE1-204ENST00000367248 PRIM1P49642 420 aaKnown RBP13.52□□□□□ -0.24
SYNE1-204ENST00000367248 EAPPQ56P03 285 aaPredicted RBP13.52□□□□□ -0.24
SYNE1-204ENST00000367248 PLCD3Q8N3E9 789 aa13.52□□□□□ -0.24
SYNE1-204ENST00000367248 MBD5Q9P267 1494 aa13.52□□□□□ -0.25
SYNE1-204ENST00000367248 ZFYP08048 801 aaPredicted RBP13.52□□□□□ -0.25
SYNE1-204ENST00000367248 SKIDA1Q1XH10 827 aa13.52□□□□□ -0.25
SYNE1-204ENST00000367248 CCDC39Q9UFE4 941 aa13.52□□□□□ -0.25
SYNE1-204ENST00000367248 STX8Q9UNK0 236 aa13.52□□□□□ -0.25
SYNE1-204ENST00000367248 MAST1Q9Y2H9 1570 aa13.52□□□□□ -0.25
SYNE1-204ENST00000367248 PDE1AP54750 535 aa13.52□□□□□ -0.25
SYNE1-204ENST00000367248 BABAM1Q9NWV8 329 aa13.52□□□□□ -0.25
SYNE1-204ENST00000367248 C8orf76Q96K31 380 aa13.52□□□□□ -0.25
SYNE1-204ENST00000367248 ARHGEF10O15013 1369 aa13.52□□□□□ -0.25
SYNE1-204ENST00000367248 CEP57L1Q8IYX8 460 aa13.51□□□□□ -0.25
SYNE1-204ENST00000367248 SAMM50Q9Y512 469 aa13.51□□□□□ -0.25
SYNE1-204ENST00000367248 MCM4P33991 863 aa13.51□□□□□ -0.25
SYNE1-204ENST00000367248 CFAP43Q8NDM7 1665 aa13.51□□□□□ -0.25
SYNE1-204ENST00000367248 NUCB1Q02818 461 aa13.51□□□□□ -0.25
SYNE1-204ENST00000367248 NYXQ9GZU5 481 aa13.51□□□□□ -0.25
SYNE1-204ENST00000367248 NUP62CLQ9H1M0 184 aa13.51□□□□□ -0.25
SYNE1-204ENST00000367248 CEP131Q9UPN4 1083 aa13.51□□□□□ -0.25
SYNE1-204ENST00000367248 IRS4O14654 1257 aaPredicted RBP13.51□□□□□ -0.25
SYNE1-204ENST00000367248 PDE4BQ07343 736 aa13.51□□□□□ -0.25
SYNE1-204ENST00000367248 SAMD9Q5K651 1589 aa13.5□□□□□ -0.25
SYNE1-204ENST00000367248 ZNF790Q6PG37 636 aa13.5□□□□□ -0.25
SYNE1-204ENST00000367248 QTRT2Q9H974 415 aaKnown RBP13.5□□□□□ -0.25
SYNE1-204ENST00000367248 HMG20BQ9P0W2 317 aa13.5□□□□□ -0.25
SYNE1-204ENST00000367248 BCS1LQ9Y276 419 aa13.5□□□□□ -0.25
SYNE1-204ENST00000367248 SERPINC1P01008 464 aa13.5□□□□□ -0.25
SYNE1-204ENST00000367248 HOXB7P09629 217 aa13.5□□□□□ -0.25
SYNE1-204ENST00000367248 SCAND2PQ9GZW5 306 aaPredicted RBP13.5□□□□□ -0.25
SYNE1-204ENST00000367248 PHAXQ9H814 394 aaKnown RBP13.5□□□□□ -0.25
SYNE1-204ENST00000367248 GSTO1P78417 241 aa13.5□□□□□ -0.25
SYNE1-204ENST00000367248 MNS1Q8NEH6 495 aa13.5□□□□□ -0.25
SYNE1-204ENST00000367248 SMARCE1Q969G3 411 aa13.5□□□□□ -0.25
SYNE1-204ENST00000367248 CRNKL1Q9BZJ0 848 aaKnown RBP13.5□□□□□ -0.25
SYNE1-204ENST00000367248 PA2G4Q9UQ80 394 aaKnown RBP13.5□□□□□ -0.25
SYNE1-204ENST00000367248 PPP4R3AQ6IN85 833 aa13.49□□□□□ -0.25
SYNE1-204ENST00000367248 CATIPQ7Z7H3 387 aa13.49□□□□□ -0.25
SYNE1-204ENST00000367248 BEGAINQ9BUH8 593 aa13.49□□□□□ -0.25
SYNE1-204ENST00000367248 GPS2Q13227 327 aa13.49□□□□□ -0.25
SYNE1-204ENST00000367248 TNNQ9UQP3 1299 aa13.49□□□□□ -0.25
SYNE1-204ENST00000367248 MFSD6Q6ZSS7 791 aa13.49□□□□□ -0.25
SYNE1-204ENST00000367248 CNBD1Q8NA66 436 aa13.49□□□□□ -0.25
SYNE1-204ENST00000367248 NCOA7Q8NI08 942 aa13.49□□□□□ -0.25
SYNE1-204ENST00000367248 NEK1Q96PY6 1258 aa13.49□□□□□ -0.25
SYNE1-204ENST00000367248 CYP7A1P22680 504 aa13.48□□□□□ -0.25
SYNE1-204ENST00000367248 CCDC194A0A1B0GVG4 234 aa13.48□□□□□ -0.25
SYNE1-204ENST00000367248 SDSP20132 328 aa13.48□□□□□ -0.25
SYNE1-204ENST00000367248 CCT2P78371 535 aaKnown RBP13.48□□□□□ -0.25
SYNE1-204ENST00000367248 USP16Q9Y5T5 823 aa13.48□□□□□ -0.25
SYNE1-204ENST00000367248 FAM43AQ8N2R8 423 aa13.48□□□□□ -0.25
SYNE1-204ENST00000367248 TMEM67Q5HYA8 995 aa13.48□□□□□ -0.25
SYNE1-204ENST00000367248 CHL1O00533 1208 aa13.48□□□□□ -0.25
SYNE1-204ENST00000367248 IARSP41252 1262 aaKnown RBP13.48□□□□□ -0.25
SYNE1-204ENST00000367248 PTPRTO14522 1441 aa13.47□□□□□ -0.25
SYNE1-204ENST00000367248 RLBP1P12271 317 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms