RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 BLOC1S2Q6QNY1 142 aa14.47□□□□□ -0.09
CLIP3-201ENST00000360535 KSR2Q6VAB6 950 aa14.47□□□□□ -0.09
CLIP3-201ENST00000360535 EVI5LQ96CN4 794 aa14.47□□□□□ -0.09
CLIP3-201ENST00000360535 DNAJC2Q99543 621 aaKnown RBP14.47□□□□□ -0.09
CLIP3-201ENST00000360535 PRDM10Q9NQV6 1147 aa14.47□□□□□ -0.09
CLIP3-201ENST00000360535 AP5Z1O43299 807 aa14.46□□□□□ -0.09
CLIP3-201ENST00000360535 LIG1P18858 919 aa14.46□□□□□ -0.09
CLIP3-201ENST00000360535 ZC3H6P61129 1189 aaKnown RBP14.46□□□□□ -0.09
CLIP3-201ENST00000360535 ST3GAL1Q11201 340 aa14.46□□□□□ -0.09
CLIP3-201ENST00000360535 VPS53Q5VIR6 699 aa14.46□□□□□ -0.09
CLIP3-201ENST00000360535 TTC41PQ6P2S7 1318 aa14.46□□□□□ -0.09
CLIP3-201ENST00000360535 RNMTO43148 476 aaKnown RBP14.46□□□□□ -0.1
CLIP3-201ENST00000360535 TTC6Q86TZ1 520 aa14.46□□□□□ -0.1
CLIP3-201ENST00000360535 DIP2AQ14689 1571 aa14.46□□□□□ -0.1
CLIP3-201ENST00000360535 FAM208AQ9UK61 1670 aaKnown RBP14.46□□□□□ -0.1
CLIP3-201ENST00000360535 GRM8O00222 908 aa14.45□□□□□ -0.1
CLIP3-201ENST00000360535 GIGYF1O75420 1035 aaPredicted RBP14.45□□□□□ -0.1
CLIP3-201ENST00000360535 AKAP4Q5JQC9 854 aa14.45□□□□□ -0.1
CLIP3-201ENST00000360535 PIK3C2AO00443 1686 aa14.45□□□□□ -0.1
CLIP3-201ENST00000360535 SLC27A2O14975 620 aa14.45□□□□□ -0.1
CLIP3-201ENST00000360535 CCDC129Q6ZRS4 1044 aa14.45□□□□□ -0.1
CLIP3-201ENST00000360535 LUZP1Q86V48 1076 aa14.45□□□□□ -0.1
CLIP3-201ENST00000360535 FBXW7Q969H0 707 aa14.45□□□□□ -0.1
CLIP3-201ENST00000360535 ZSWIM6Q9HCJ5 1215 aa14.45□□□□□ -0.1
CLIP3-201ENST00000360535 NALCNQ8IZF0 1738 aa14.45□□□□□ -0.1
CLIP3-201ENST00000360535 ZNF589Q86UQ0 364 aaPredicted RBP14.45□□□□□ -0.1
CLIP3-201ENST00000360535 KRT85P78386 507 aa14.44□□□□□ -0.1
CLIP3-201ENST00000360535 NECTIN1Q15223 517 aa14.44□□□□□ -0.1
CLIP3-201ENST00000360535 LARP1Q6PKG0 1096 aaKnown RBP14.44□□□□□ -0.1
CLIP3-201ENST00000360535 ZSCAN31Q96LW9 406 aaPredicted RBP14.44□□□□□ -0.1
CLIP3-201ENST00000360535 ORAI2Q96SN7 254 aa14.44□□□□□ -0.1
CLIP3-201ENST00000360535 MYD88Q99836 296 aa14.44□□□□□ -0.1
CLIP3-201ENST00000360535 LETM1O95202 739 aaPredicted RBP14.44□□□□□ -0.1
CLIP3-201ENST00000360535 BICD2Q8TD16 824 aa14.44□□□□□ -0.1
CLIP3-201ENST00000360535 TOPAZ1Q8N9V7 1692 aa14.44□□□□□ -0.1
CLIP3-201ENST00000360535 UVSSAQ2YD98 709 aa14.43□□□□□ -0.1
CLIP3-201ENST00000360535 ERC1Q8IUD2 1116 aa14.43□□□□□ -0.1
CLIP3-201ENST00000360535 SH2B1Q9NRF2 756 aaPredicted RBP14.43□□□□□ -0.1
CLIP3-201ENST00000360535 BABAM1Q9NWV8 329 aa14.43□□□□□ -0.1
CLIP3-201ENST00000360535 DACT1Q9NYF0 836 aa14.43□□□□□ -0.1
CLIP3-201ENST00000360535 JAK2O60674 1132 aa14.43□□□□□ -0.1
CLIP3-201ENST00000360535 CCDC192P0DO97 292 aa14.43□□□□□ -0.1
CLIP3-201ENST00000360535 ANKRD24Q8TF21 1146 aa14.43□□□□□ -0.1
CLIP3-201ENST00000360535 SEC62Q99442 399 aaKnown RBP14.43□□□□□ -0.1
CLIP3-201ENST00000360535 NUP62CLQ9H1M0 184 aa14.43□□□□□ -0.1
CLIP3-201ENST00000360535 PYCARDQ9ULZ3 195 aa14.43□□□□□ -0.1
CLIP3-201ENST00000360535 ATP5J2-PTCD1G3V325 749 aa14.43□□□□□ -0.1
CLIP3-201ENST00000360535 PTCD1O75127 700 aaKnown RBP14.43□□□□□ -0.1
CLIP3-201ENST00000360535 TMEM87AQ8NBN3 555 aa14.43□□□□□ -0.1
CLIP3-201ENST00000360535 SPATA32Q96LK8 384 aa14.43□□□□□ -0.1
CLIP3-201ENST00000360535 DYNC1I1O14576 645 aa14.42□□□□□ -0.1
CLIP3-201ENST00000360535 SLFNL1Q499Z3 407 aa14.42□□□□□ -0.1
CLIP3-201ENST00000360535 PIBF1Q8WXW3 757 aa14.42□□□□□ -0.1
CLIP3-201ENST00000360535 KAZALD1Q96I82 304 aa14.42□□□□□ -0.1
CLIP3-201ENST00000360535 TNMDQ9H2S6 317 aa14.42□□□□□ -0.1
CLIP3-201ENST00000360535 DDX58O95786 925 aaKnown RBP14.42□□□□□ -0.1
CLIP3-201ENST00000360535 PSMA5P28066 241 aa14.42□□□□□ -0.1
CLIP3-201ENST00000360535 GCP02774 474 aa14.42□□□□□ -0.1
CLIP3-201ENST00000360535 EPHA10Q5JZY3 1008 aa14.42□□□□□ -0.1
CLIP3-201ENST00000360535 RNF20Q5VTR2 975 aa14.42□□□□□ -0.1
CLIP3-201ENST00000360535 COPS6Q7L5N1 327 aa14.42□□□□□ -0.1
CLIP3-201ENST00000360535 XAGE3Q8WTP9 111 aa14.42□□□□□ -0.1
CLIP3-201ENST00000360535 NLRP2Q9NX02 1062 aa14.42□□□□□ -0.1
CLIP3-201ENST00000360535 CEMIPQ8WUJ3 1361 aa14.42□□□□□ -0.1
CLIP3-201ENST00000360535 CACNA1FO60840 1977 aa14.41□□□□□ -0.1
CLIP3-201ENST00000360535 TERF1P54274 439 aa14.41□□□□□ -0.1
CLIP3-201ENST00000360535 NEXNQ0ZGT2 675 aa14.41□□□□□ -0.1
CLIP3-201ENST00000360535 MAP3K11Q16584 847 aa14.41□□□□□ -0.1
CLIP3-201ENST00000360535 H3BQV1 296 aa14.41□□□□□ -0.1
CLIP3-201ENST00000360535 ALDH1L1O75891 902 aa14.41□□□□□ -0.1
CLIP3-201ENST00000360535 PTGS1P23219 599 aa14.41□□□□□ -0.1
CLIP3-201ENST00000360535 IFFO2Q5TF58 517 aa14.41□□□□□ -0.1
CLIP3-201ENST00000360535 LINS1Q8NG48 757 aa14.41□□□□□ -0.1
CLIP3-201ENST00000360535 MAP4K1Q92918 833 aa14.41□□□□□ -0.1
CLIP3-201ENST00000360535 TUBGCP6Q96RT7 1819 aa14.41□□□□□ -0.1
CLIP3-201ENST00000360535 A0A087WWV3 80 aa14.4□□□□□ -0.1
CLIP3-201ENST00000360535 ANO6Q4KMQ2 910 aa14.4□□□□□ -0.1
CLIP3-201ENST00000360535 DDX46Q7L014 1031 aaKnown RBP14.4□□□□□ -0.1
CLIP3-201ENST00000360535 AXIN2Q9Y2T1 843 aa14.4□□□□□ -0.1
CLIP3-201ENST00000360535 NFATC2IPQ8NCF5 419 aa14.4□□□□□ -0.1
CLIP3-201ENST00000360535 NEUROD6Q96NK8 337 aa14.4□□□□□ -0.1
CLIP3-201ENST00000360535 TRIM5Q9C035 493 aa14.4□□□□□ -0.1
CLIP3-201ENST00000360535 NWD1Q149M9 1564 aa14.4□□□□□ -0.1
CLIP3-201ENST00000360535 TYRO3Q06418 890 aa14.4□□□□□ -0.1
CLIP3-201ENST00000360535 UBE3BQ7Z3V4 1068 aa14.4□□□□□ -0.1
CLIP3-201ENST00000360535 PXDNLA1KZ92 1463 aa14.39□□□□□ -0.11
CLIP3-201ENST00000360535 EPB41L2O43491 1005 aaKnown RBP14.39□□□□□ -0.11
CLIP3-201ENST00000360535 IGKV5-2P06315 115 aa14.39□□□□□ -0.11
CLIP3-201ENST00000360535 GUCY1B3Q02153 619 aa14.39□□□□□ -0.11
CLIP3-201ENST00000360535 CHMP4AQ9BY43 222 aa14.39□□□□□ -0.11
CLIP3-201ENST00000360535 HOXB7P09629 217 aa14.39□□□□□ -0.11
CLIP3-201ENST00000360535 LRMPQ12912 555 aa14.39□□□□□ -0.11
CLIP3-201ENST00000360535 NRBP1Q9UHY1 535 aa14.39□□□□□ -0.11
CLIP3-201ENST00000360535 CSB-PGBD3P0DP91 1061 aa14.39□□□□□ -0.11
CLIP3-201ENST00000360535 TFCP2Q12800 502 aa14.39□□□□□ -0.11
CLIP3-201ENST00000360535 IL17RAQ96F46 866 aa14.39□□□□□ -0.11
CLIP3-201ENST00000360535 KCNF1Q9H3M0 494 aa14.39□□□□□ -0.11
CLIP3-201ENST00000360535 RPS6KB1P23443 525 aa14.38□□□□□ -0.11
CLIP3-201ENST00000360535 KCNH5Q8NCM2 988 aa14.38□□□□□ -0.11
CLIP3-201ENST00000360535 TM6SF1Q9BZW5 370 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms