RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 NUP88Q99567 741 aaPredicted RBP18.01■□□□□ 0.47
PTPRF-201ENST00000359947 TCP11L1Q9NUJ3 509 aa18.01■□□□□ 0.47
PTPRF-201ENST00000359947 PTPN23Q9H3S7 1636 aa18.01■□□□□ 0.47
PTPRF-201ENST00000359947 PHAXQ9H814 394 aaKnown RBP18.01■□□□□ 0.47
PTPRF-201ENST00000359947 RTCBQ9Y3I0 505 aaKnown RBP18.01■□□□□ 0.47
PTPRF-201ENST00000359947 NPHP3Q7Z494 1330 aa18.01■□□□□ 0.47
PTPRF-201ENST00000359947 METAP2P50579 478 aaKnown RBP eCLIP18.01■□□□□ 0.47
PTPRF-201ENST00000359947 NSFL1CQ9UNZ2 370 aaKnown RBP18.01■□□□□ 0.47
PTPRF-201ENST00000359947 IARSP41252 1262 aaKnown RBP18■□□□□ 0.47
PTPRF-201ENST00000359947 IQCEQ6IPM2 695 aa18■□□□□ 0.47
PTPRF-201ENST00000359947 ZNF408Q9H9D4 720 aa18■□□□□ 0.47
PTPRF-201ENST00000359947 CCDC12Q8WUD4 166 aaPredicted RBP18■□□□□ 0.47
PTPRF-201ENST00000359947 BACH2Q9BYV9 841 aa18■□□□□ 0.47
PTPRF-201ENST00000359947 TFIP11Q9UBB9 837 aaKnown RBP18■□□□□ 0.47
PTPRF-201ENST00000359947 SLC4A4Q9Y6R1 1079 aa18■□□□□ 0.47
PTPRF-201ENST00000359947 GSTTP1A0A1W2PQM5 241 aa18■□□□□ 0.47
PTPRF-201ENST00000359947 JDP2Q8WYK2 163 aa18■□□□□ 0.47
PTPRF-201ENST00000359947 PRC1O43663 620 aa18■□□□□ 0.47
PTPRF-201ENST00000359947 PCF11O94913 1555 aaKnown RBP18■□□□□ 0.47
PTPRF-201ENST00000359947 VPS36Q86VN1 386 aa18■□□□□ 0.47
PTPRF-201ENST00000359947 LMTK3Q96Q04 1460 aa17.99■□□□□ 0.47
PTPRF-201ENST00000359947 ZNF354CQ86Y25 554 aa17.99■□□□□ 0.47
PTPRF-201ENST00000359947 MTIF2P46199 727 aaKnown RBP17.99■□□□□ 0.47
PTPRF-201ENST00000359947 ECHDC1Q9NTX5 307 aa17.99■□□□□ 0.47
PTPRF-201ENST00000359947 CWC15Q9P013 229 aaKnown RBP17.99■□□□□ 0.47
PTPRF-201ENST00000359947 NF2P35240 595 aa17.99■□□□□ 0.47
PTPRF-201ENST00000359947 CCDC40Q4G0X9 1142 aa17.99■□□□□ 0.47
PTPRF-201ENST00000359947 DZIP3Q86Y13 1208 aaKnown RBP17.99■□□□□ 0.47
PTPRF-201ENST00000359947 LRRC2Q9BYS8 371 aa17.99■□□□□ 0.47
PTPRF-201ENST00000359947 PTPRCP08575 1304 aa17.99■□□□□ 0.47
PTPRF-201ENST00000359947 HEATR3Q7Z4Q2 680 aa17.99■□□□□ 0.47
PTPRF-201ENST00000359947 CCDC148Q8NFR7 591 aa17.99■□□□□ 0.47
PTPRF-201ENST00000359947 TRIM27P14373 513 aa17.98■□□□□ 0.47
PTPRF-201ENST00000359947 HELBQ8NG08 1087 aaPredicted RBP17.98■□□□□ 0.47
PTPRF-201ENST00000359947 CCDC102AQ96A19 550 aa17.98■□□□□ 0.47
PTPRF-201ENST00000359947 NFATC2IPQ8NCF5 419 aa17.98■□□□□ 0.47
PTPRF-201ENST00000359947 UTP14AQ9BVJ6 771 aaKnown RBP17.98■□□□□ 0.47
PTPRF-201ENST00000359947 ZC3H12CQ9C0D7 883 aaKnown RBP17.98■□□□□ 0.47
PTPRF-201ENST00000359947 BRPF3Q9ULD4 1205 aa17.98■□□□□ 0.47
PTPRF-201ENST00000359947 IFIT1BQ5T764 474 aaKnown RBP17.98■□□□□ 0.47
PTPRF-201ENST00000359947 FGFR1OPO95684 399 aaKnown RBP17.97■□□□□ 0.47
PTPRF-201ENST00000359947 GRPEL1Q9HAV7 217 aa17.97■□□□□ 0.47
PTPRF-201ENST00000359947 KIF20AO95235 890 aa17.97■□□□□ 0.47
PTPRF-201ENST00000359947 ZNF804AQ7Z570 1209 aa17.97■□□□□ 0.47
PTPRF-201ENST00000359947 NCOA7Q8NI08 942 aa17.97■□□□□ 0.47
PTPRF-201ENST00000359947 ERLIN1O75477 346 aa17.97■□□□□ 0.47
PTPRF-201ENST00000359947 GDPD2Q9HCC8 539 aa17.97■□□□□ 0.47
PTPRF-201ENST00000359947 UBA7P41226 1012 aa17.96■□□□□ 0.47
PTPRF-201ENST00000359947 CETN1Q12798 172 aa17.96■□□□□ 0.47
PTPRF-201ENST00000359947 NAA16Q6N069 864 aaPredicted RBP17.96■□□□□ 0.47
PTPRF-201ENST00000359947 FSIP1Q8NA03 581 aa17.96■□□□□ 0.47
PTPRF-201ENST00000359947 DPH6Q7L8W6 267 aa17.96■□□□□ 0.47
PTPRF-201ENST00000359947 PODXL2Q9NZ53 605 aa17.96■□□□□ 0.47
PTPRF-201ENST00000359947 PIK3R4Q99570 1358 aa17.96■□□□□ 0.47
PTPRF-201ENST00000359947 PRPF4BQ13523 1007 aaKnown RBP17.96■□□□□ 0.47
PTPRF-201ENST00000359947 LMOD1P29536 600 aaPredicted RBP17.96■□□□□ 0.46
PTPRF-201ENST00000359947 SP4Q02446 784 aa17.96■□□□□ 0.46
PTPRF-201ENST00000359947 IL2RBP14784 551 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 GJB2P29033 226 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 WTAPQ15007 396 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 ZRANB1Q9UGI0 708 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 LIMCH1Q9UPQ0 1083 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 ATP2B3Q16720 1220 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 DYDC1Q8WWB3 177 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 SMARCC1Q92922 1105 aaPredicted RBP17.95■□□□□ 0.46
PTPRF-201ENST00000359947 FAM212AQ96EL1 285 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 KIAA0754O94854 1291 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 CALM1P0DP23 149 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 CALM2P0DP24 149 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 CALM3P0DP25 149 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 TOP1P11387 765 aaKnown RBP17.95■□□□□ 0.46
PTPRF-201ENST00000359947 SH2B1Q9NRF2 756 aaPredicted RBP17.95■□□□□ 0.46
PTPRF-201ENST00000359947 ORC3Q9UBD5 711 aaPredicted RBP17.95■□□□□ 0.46
PTPRF-201ENST00000359947 NKTRP30414 1462 aaKnown RBP17.95■□□□□ 0.46
PTPRF-201ENST00000359947 ZBTB21Q9ULJ3 1066 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 GRIN2AQ12879 1464 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 GNPATO15228 680 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 UQCRFS1P1P0C7P4 283 aa17.95■□□□□ 0.46
PTPRF-201ENST00000359947 ANO10Q9NW15 660 aa17.94■□□□□ 0.46
PTPRF-201ENST00000359947 BTG4Q9NY30 223 aa17.94■□□□□ 0.46
PTPRF-201ENST00000359947 NEK1Q96PY6 1258 aa17.94■□□□□ 0.46
PTPRF-201ENST00000359947 SBNO2Q9Y2G9 1366 aa17.94■□□□□ 0.46
PTPRF-201ENST00000359947 AMPD3Q01432 767 aa17.94■□□□□ 0.46
PTPRF-201ENST00000359947 LMBR1LQ6UX01 489 aa17.94■□□□□ 0.46
PTPRF-201ENST00000359947 TMCO5BA8MYB1 307 aa17.94■□□□□ 0.46
PTPRF-201ENST00000359947 HMGN5P82970 282 aaKnown RBP17.94■□□□□ 0.46
PTPRF-201ENST00000359947 TPTE2Q6XPS3 522 aa17.94■□□□□ 0.46
PTPRF-201ENST00000359947 BCCIPQ9P287 314 aaKnown RBP eCLIP17.94■□□□□ 0.46
PTPRF-201ENST00000359947 LUZP1Q86V48 1076 aa17.94■□□□□ 0.46
PTPRF-201ENST00000359947 ABCC11Q96J66 1382 aa17.94■□□□□ 0.46
PTPRF-201ENST00000359947 CCDC174Q6PII3 467 aa17.93■□□□□ 0.46
PTPRF-201ENST00000359947 MIGA1Q8NAN2 632 aa17.93■□□□□ 0.46
PTPRF-201ENST00000359947 SYNCQ9H7C4 482 aa17.93■□□□□ 0.46
PTPRF-201ENST00000359947 PRXQ9BXM0 1461 aa17.93■□□□□ 0.46
PTPRF-201ENST00000359947 TBCAO75347 108 aaKnown RBP17.93■□□□□ 0.46
PTPRF-201ENST00000359947 NYXQ9GZU5 481 aa17.93■□□□□ 0.46
PTPRF-201ENST00000359947 ZGPATQ8N5A5 531 aaKnown RBP17.93■□□□□ 0.46
PTPRF-201ENST00000359947 SFPQP23246 707 aaKnown RBP eCLIP17.93■□□□□ 0.463e-6■■□□□ 13
PTPRF-201ENST00000359947 AKNAD1Q5T1N1 836 aa17.93■□□□□ 0.46
PTPRF-201ENST00000359947 HOOK3Q86VS8 718 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms