RNA–Protein interactions for RNA: ENST00000358528.8

CSDE1-203, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSDE1, Length 4,076 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-203ENST00000358528 CBX8Q9HC52 389 aa7.75□□□□□ -1.17
CSDE1-203ENST00000358528 STAP2Q9UGK3 403 aa7.75□□□□□ -1.17
CSDE1-203ENST00000358528 CCDC171Q6TFL3 1326 aa7.75□□□□□ -1.17
CSDE1-203ENST00000358528 FLT4P35916 1363 aa7.75□□□□□ -1.17
CSDE1-203ENST00000358528 PPLO60437 1756 aa7.75□□□□□ -1.17
CSDE1-203ENST00000358528 SLC39A6Q13433 755 aa7.75□□□□□ -1.17
CSDE1-203ENST00000358528 VPS53Q5VIR6 699 aa7.75□□□□□ -1.17
CSDE1-203ENST00000358528 DDX46Q7L014 1031 aaKnown RBP7.75□□□□□ -1.17
CSDE1-203ENST00000358528 CDK12Q9NYV4 1490 aaPredicted RBP7.75□□□□□ -1.17
CSDE1-203ENST00000358528 MLH3Q9UHC1 1453 aa7.75□□□□□ -1.17
CSDE1-203ENST00000358528 MYO3AQ8NEV4 1616 aa7.75□□□□□ -1.17
CSDE1-203ENST00000358528 HIP1O00291 1037 aa7.74□□□□□ -1.17
CSDE1-203ENST00000358528 PTPN14Q15678 1187 aa7.74□□□□□ -1.17
CSDE1-203ENST00000358528 PLEKHO1Q53GL0 409 aaPredicted RBP7.74□□□□□ -1.17
CSDE1-203ENST00000358528 SMAP1Q8IYB5 467 aaPredicted RBP7.74□□□□□ -1.17
CSDE1-203ENST00000358528 CCDC85AQ96PX6 553 aaPredicted RBP7.74□□□□□ -1.17
CSDE1-203ENST00000358528 AATKQ6ZMQ8 1374 aa7.74□□□□□ -1.17
CSDE1-203ENST00000358528 ARHGEF40Q8TER5 1519 aa7.74□□□□□ -1.17
CSDE1-203ENST00000358528 CPLX1O14810 134 aa7.74□□□□□ -1.17
CSDE1-203ENST00000358528 NAA30Q147X3 362 aaPredicted RBP7.74□□□□□ -1.17
CSDE1-203ENST00000358528 WASHC4Q2M389 1173 aa7.74□□□□□ -1.17
CSDE1-203ENST00000358528 CREBRFQ8IUR6 639 aa7.74□□□□□ -1.17
CSDE1-203ENST00000358528 PI4K2BQ8TCG2 481 aa7.74□□□□□ -1.17
CSDE1-203ENST00000358528 MYD88Q99836 296 aa7.74□□□□□ -1.17
CSDE1-203ENST00000358528 CGNQ9P2M7 1197 aaKnown RBP7.74□□□□□ -1.17
CSDE1-203ENST00000358528 DBF4Q9UBU7 674 aaPredicted RBP7.74□□□□□ -1.17
CSDE1-203ENST00000358528 ARHGEF28Q8N1W1 1705 aaKnown RBP7.74□□□□□ -1.17
CSDE1-203ENST00000358528 ATP7BP35670 1465 aa7.74□□□□□ -1.17
CSDE1-203ENST00000358528 ATP5J2-PTCD1G3V325 749 aa7.74□□□□□ -1.17
CSDE1-203ENST00000358528 PTCD1O75127 700 aaKnown RBP7.74□□□□□ -1.17
CSDE1-203ENST00000358528 HOXC9P31274 260 aa7.74□□□□□ -1.17
CSDE1-203ENST00000358528 STK38Q15208 465 aa7.74□□□□□ -1.17
CSDE1-203ENST00000358528 TRERF1Q96PN7 1200 aa7.74□□□□□ -1.17
CSDE1-203ENST00000358528 DDX19AQ9NUU7 478 aaKnown RBP7.74□□□□□ -1.17
CSDE1-203ENST00000358528 NLRP2Q9NX02 1062 aa7.74□□□□□ -1.17
CSDE1-203ENST00000358528 SLC27A2O14975 620 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 NR1I2O75469 434 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 TPM4P67936 248 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 Q6ZUG5 572 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 CCAR1Q8IX12 1150 aaKnown RBP7.73□□□□□ -1.17
CSDE1-203ENST00000358528 TMX1Q9H3N1 280 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 USP16Q9Y5T5 823 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 SETD1BQ9UPS6 1966 aaKnown RBP7.73□□□□□ -1.17
CSDE1-203ENST00000358528 A0A0D9SFI3 127 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 ATP2B3Q16720 1220 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 CEP135Q66GS9 1140 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 FSIP1Q8NA03 581 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 BICC1Q9H694 974 aaKnown RBP7.73□□□□□ -1.17
CSDE1-203ENST00000358528 CFAP45Q9UL16 551 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 ALKQ9UM73 1620 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 HECW2Q9P2P5 1572 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 CPS1P31327 1500 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 MAP3K5Q99683 1374 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 POLR3DP05423 398 aaPredicted RBP7.73□□□□□ -1.17
CSDE1-203ENST00000358528 SKILP12757 684 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 TAF7LQ5H9L4 462 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 TTC5Q8N0Z6 440 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 NEK1Q96PY6 1258 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 TOMM22Q9NS69 142 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 TLR7Q9NYK1 1049 aaKnown RBP7.73□□□□□ -1.17
CSDE1-203ENST00000358528 PRAMEF22A3QJZ6 481 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 ZC3H6P61129 1189 aaKnown RBP7.73□□□□□ -1.17
CSDE1-203ENST00000358528 KIAA1524Q8TCG1 905 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 LEO1Q8WVC0 666 aaPredicted RBP7.73□□□□□ -1.17
CSDE1-203ENST00000358528 PODXL2Q9NZ53 605 aa7.73□□□□□ -1.17
CSDE1-203ENST00000358528 CPSF1Q10570 1443 aaKnown RBP7.72□□□□□ -1.17
CSDE1-203ENST00000358528 RPAP1Q9BWH6 1393 aaPredicted RBP7.72□□□□□ -1.17
CSDE1-203ENST00000358528 LMTK2Q8IWU2 1503 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 APPP05067 770 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 ATP2B1P20020 1258 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 HAND2P61296 217 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 FKBP4Q02790 459 aaKnown RBP eCLIP7.72□□□□□ -1.17
CSDE1-203ENST00000358528 PROSER3Q2NL68 480 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 SYNE3Q6ZMZ3 975 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 PDILTQ8N807 584 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 EAF2Q96CJ1 260 aaPredicted RBP7.72□□□□□ -1.17
CSDE1-203ENST00000358528 SEC62Q99442 399 aaKnown RBP7.72□□□□□ -1.17
CSDE1-203ENST00000358528 MRVI1Q9Y6F6 885 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 ABCA9Q8IUA7 1624 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 NPHP3Q7Z494 1330 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 HSP90AA4PQ58FG1 418 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 UBE3BQ7Z3V4 1068 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 AOPEPQ8N6M6 819 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 FTOQ9C0B1 505 aaKnown RBP eCLIP7.72□□□□□ -1.17
CSDE1-203ENST00000358528 NCOA5Q9HCD5 579 aaKnown RBP7.72□□□□□ -1.17
CSDE1-203ENST00000358528 TTC41PQ6P2S7 1318 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 GRM8O00222 908 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 AP5Z1O43299 807 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 APOBRQ0VD83 1088 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 ARID5BQ14865 1188 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 CEP57L1Q8IYX8 460 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 SUCLG2Q96I99 432 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 TTC14Q96N46 770 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 KCNF1Q9H3M0 494 aa7.72□□□□□ -1.17
CSDE1-203ENST00000358528 ROBO2Q9HCK4 1378 aa7.71□□□□□ -1.17
CSDE1-203ENST00000358528 GOLIM4O00461 696 aa7.71□□□□□ -1.17
CSDE1-203ENST00000358528 LTKP29376 864 aa7.71□□□□□ -1.17
CSDE1-203ENST00000358528 ZNF75DP51815 510 aa7.71□□□□□ -1.17
CSDE1-203ENST00000358528 SSH2Q76I76 1423 aa7.71□□□□□ -1.17
CSDE1-203ENST00000358528 MNS1Q8NEH6 495 aa7.71□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms