RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 GJB2P29033 226 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 NF2P35240 595 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 FOXD4Q12950 439 aaPredicted RBP8.51□□□□□ -1.05
VPS13A-202ENST00000357409 GIMAP6Q6P9H5 292 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 CMTR1Q8N1G2 835 aaKnown RBP8.51□□□□□ -1.05
VPS13A-202ENST00000357409 TTC30BQ8N4P2 665 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 RDH13Q8NBN7 331 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 HGSO14964 777 aaPredicted RBP8.51□□□□□ -1.05
VPS13A-202ENST00000357409 CCDC194A0A1B0GVG4 234 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 MYCLP12524 364 aaPredicted RBP8.51□□□□□ -1.05
VPS13A-202ENST00000357409 PPP1R42Q7Z4L9 355 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 DNAAF4Q8WXU2 420 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 ERLIN2O94905 339 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 KCNH5Q8NCM2 988 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 IGHDP01880 384 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 HLTFQ14527 1009 aaKnown RBP eCLIP8.51□□□□□ -1.051e-6■■□□□ 13.4
VPS13A-202ENST00000357409 CCDC40Q4G0X9 1142 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 TAF4BQ92750 862 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 FAM107BQ9H098 131 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 KRT9P35527 623 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 IFIT1BQ5T764 474 aaKnown RBP8.5□□□□□ -1.05
VPS13A-202ENST00000357409 TAF12Q16514 161 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 USH1GQ495M9 461 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 CATIPQ7Z7H3 387 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 CCDC191Q8NCU4 936 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 CWC25Q9NXE8 425 aaPredicted RBP8.5□□□□□ -1.05
VPS13A-202ENST00000357409 ANKRD50Q9ULJ7 1429 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 CCDC192P0DO97 292 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 FAM47CQ5HY64 1035 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 RTCBQ9Y3I0 505 aaKnown RBP8.5□□□□□ -1.05
VPS13A-202ENST00000357409 MRVI1Q9Y6F6 885 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 CCDC50Q8IVM0 306 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 MAGEB6Q8N7X4 407 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 PAGR1Q9BTK6 254 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 PHAXQ9H814 394 aaKnown RBP8.5□□□□□ -1.05
VPS13A-202ENST00000357409 USP25Q9UHP3 1055 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 NESP48681 1621 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 GNPATO15228 680 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.5□□□□□ -1.05
VPS13A-202ENST00000357409 MCM9Q9NXL9 1143 aa8.5□□□□□ -1.05
VPS13A-202ENST00000357409 NSD3Q9BZ95 1437 aa8.49□□□□□ -1.05
VPS13A-202ENST00000357409 CTNNA3Q9UI47 895 aa8.49□□□□□ -1.05
VPS13A-202ENST00000357409 RDXP35241 583 aaKnown RBP8.49□□□□□ -1.05
VPS13A-202ENST00000357409 IARSP41252 1262 aaKnown RBP8.49□□□□□ -1.05
VPS13A-202ENST00000357409 ANKRD13DQ6ZTN6 518 aa8.49□□□□□ -1.05
VPS13A-202ENST00000357409 CCDC129Q6ZRS4 1044 aa8.49□□□□□ -1.05
VPS13A-202ENST00000357409 BAG4O95429 457 aaKnown RBP8.49□□□□□ -1.05
VPS13A-202ENST00000357409 SLC9C2Q5TAH2 1124 aa8.49□□□□□ -1.05
VPS13A-202ENST00000357409 CCDC39Q9UFE4 941 aa8.49□□□□□ -1.05
VPS13A-202ENST00000357409 MX1P20591 662 aa8.49□□□□□ -1.05
VPS13A-202ENST00000357409 SYNCQ9H7C4 482 aa8.49□□□□□ -1.05
VPS13A-202ENST00000357409 KLF18A0A0U1RQI7 1052 aa8.49□□□□□ -1.05
VPS13A-202ENST00000357409 STK25O00506 426 aa8.49□□□□□ -1.05
VPS13A-202ENST00000357409 CCDC174Q6PII3 467 aa8.49□□□□□ -1.05
VPS13A-202ENST00000357409 RFX1P22670 979 aa8.49□□□□□ -1.05
VPS13A-202ENST00000357409 FSIP1Q8NA03 581 aa8.49□□□□□ -1.05
VPS13A-202ENST00000357409 NOD1Q9Y239 953 aa8.49□□□□□ -1.05
VPS13A-202ENST00000357409 MCM7P33993 719 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 DHX58Q96C10 678 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 ORAI2Q96SN7 254 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 IGSF3O75054 1194 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 POLD1P28340 1107 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 BRF1Q92994 677 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 MCM2P49736 904 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.48□□□□□ -1.05
VPS13A-202ENST00000357409 V9GYY5 206 aaPredicted RBP8.48□□□□□ -1.05
VPS13A-202ENST00000357409 MFSD6Q6ZSS7 791 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 RABEP2Q9H5N1 569 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 ORC3Q9UBD5 711 aaPredicted RBP8.48□□□□□ -1.05
VPS13A-202ENST00000357409 FCHSD2O94868 740 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 CASQ1P31415 396 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 METAP2P50579 478 aaKnown RBP eCLIP8.48□□□□□ -1.05
VPS13A-202ENST00000357409 ARHGAP29Q52LW3 1261 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 TMC6Q7Z403 805 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 ANKRD1Q15327 319 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 PTPROQ16827 1216 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 NEK1Q96PY6 1258 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 TSG101Q99816 390 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 TTLL3Q9Y4R7 772 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 BACH1O14867 736 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 PRDM1O75626 825 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 CALRP27797 417 aaKnown RBP8.48□□□□□ -1.05
VPS13A-202ENST00000357409 ERCC5P28715 1186 aaPredicted RBP8.48□□□□□ -1.05
VPS13A-202ENST00000357409 NAA16Q6N069 864 aaPredicted RBP8.48□□□□□ -1.05
VPS13A-202ENST00000357409 JDP2Q8WYK2 163 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 UQCRHLA0A096LP55 91 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 HLA-DOAP06340 250 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 UQCRHP07919 91 aa8.48□□□□□ -1.05
VPS13A-202ENST00000357409 ZNF397Q8NF99 534 aaPredicted RBP8.48□□□□□ -1.05
VPS13A-202ENST00000357409 IGF1RP08069 1367 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 PRIM1P49642 420 aaKnown RBP8.47□□□□□ -1.05
VPS13A-202ENST00000357409 LEKR1Q6ZMV7 388 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 STAMQ92783 540 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 PPP1R16BQ96T49 567 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 DACH1Q9UI36 760 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 RNF187Q5TA31 235 aaPredicted RBP8.47□□□□□ -1.05
VPS13A-202ENST00000357409 JMYQ8N9B5 988 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 ACBD3Q9H3P7 528 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 MYO6Q9UM54 1294 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 C8orf58Q8NAV2 365 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms