RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 MAP3K11Q16584 847 aa18.51■□□□□ 0.55
RTN3-205ENST00000356000 IL16Q14005 1332 aa18.51■□□□□ 0.55
RTN3-205ENST00000356000 TMEM131LA2VDJ0 1609 aa18.5■□□□□ 0.55
RTN3-205ENST00000356000 SEC31AO94979 1220 aaKnown RBP18.5■□□□□ 0.55
RTN3-205ENST00000356000 C16orf71Q8IYS4 520 aaPredicted RBP18.5■□□□□ 0.55
RTN3-205ENST00000356000 DCTPP1Q9H773 170 aa18.5■□□□□ 0.55
RTN3-205ENST00000356000 TRMT1Q9NXH9 659 aaKnown RBP18.5■□□□□ 0.55
RTN3-205ENST00000356000 ATP6V1DQ9Y5K8 247 aa18.5■□□□□ 0.55
RTN3-205ENST00000356000 CHD2O14647 1828 aaKnown RBP18.5■□□□□ 0.55
RTN3-205ENST00000356000 CCZ1BP86790 482 aa18.5■□□□□ 0.55
RTN3-205ENST00000356000 CCZ1P86791 482 aaPredicted RBP18.5■□□□□ 0.55
RTN3-205ENST00000356000 MAP2K1Q02750 393 aaPredicted RBP18.5■□□□□ 0.55
RTN3-205ENST00000356000 RNF217Q8TC41 542 aa18.5■□□□□ 0.55
RTN3-205ENST00000356000 ANAPC15P60006 121 aa18.49■□□□□ 0.55
RTN3-205ENST00000356000 NOL8Q76FK4 1167 aaKnown RBP18.49■□□□□ 0.55
RTN3-205ENST00000356000 UBXN4Q92575 508 aa18.49■□□□□ 0.55
RTN3-205ENST00000356000 SGSM3Q96HU1 749 aa18.49■□□□□ 0.55
RTN3-205ENST00000356000 TRDNQ13061 729 aa18.49■□□□□ 0.55
RTN3-205ENST00000356000 ANO6Q4KMQ2 910 aa18.49■□□□□ 0.55
RTN3-205ENST00000356000 MORC1Q86VD1 984 aa18.49■□□□□ 0.55
RTN3-205ENST00000356000 F13A1P00488 732 aa18.48■□□□□ 0.55
RTN3-205ENST00000356000 ARID5BQ14865 1188 aa18.48■□□□□ 0.55
RTN3-205ENST00000356000 MSH6P52701 1360 aa18.48■□□□□ 0.55
RTN3-205ENST00000356000 IRF6O14896 467 aa18.48■□□□□ 0.55
RTN3-205ENST00000356000 PPP1R12AO14974 1030 aaPredicted RBP18.48■□□□□ 0.55
RTN3-205ENST00000356000 FAM212AQ96EL1 285 aa18.48■□□□□ 0.55
RTN3-205ENST00000356000 IL17RAQ96F46 866 aa18.48■□□□□ 0.55
RTN3-205ENST00000356000 TPM1P09493 284 aa18.47■□□□□ 0.55
RTN3-205ENST00000356000 SNW1Q13573 536 aaKnown RBP18.47■□□□□ 0.55
RTN3-205ENST00000356000 NUP62CLQ9H1M0 184 aa18.47■□□□□ 0.55
RTN3-205ENST00000356000 TRIM35Q9UPQ4 493 aa18.47■□□□□ 0.55
RTN3-205ENST00000356000 STX6O43752 255 aa18.46■□□□□ 0.55
RTN3-205ENST00000356000 IDI1Q13907 227 aa18.46■□□□□ 0.55
RTN3-205ENST00000356000 CCDC158Q5M9N0 1113 aa18.46■□□□□ 0.55
RTN3-205ENST00000356000 CC2D1AQ6P1N0 951 aaPredicted RBP18.46■□□□□ 0.55
RTN3-205ENST00000356000 ARHGAP45Q92619 1136 aa18.46■□□□□ 0.55
RTN3-205ENST00000356000 TUBB4AP04350 444 aa18.46■□□□□ 0.55
RTN3-205ENST00000356000 EFCAB13Q8IY85 973 aa18.46■□□□□ 0.55
RTN3-205ENST00000356000 OTUD7AQ8TE49 926 aaPredicted RBP18.46■□□□□ 0.55
RTN3-205ENST00000356000 MRFAP1L1Q96HT8 127 aa18.46■□□□□ 0.55
RTN3-205ENST00000356000 CFAP53Q96M91 514 aa18.46■□□□□ 0.55
RTN3-205ENST00000356000 TBX22Q9Y458 520 aa18.46■□□□□ 0.55
RTN3-205ENST00000356000 PTCH1Q13635 1447 aa18.46■□□□□ 0.55
RTN3-205ENST00000356000 TRPM2O94759 1503 aa18.46■□□□□ 0.55
RTN3-205ENST00000356000 ROBO1Q9Y6N7 1651 aa18.45■□□□□ 0.54
RTN3-205ENST00000356000 TMEM94Q12767 1356 aa18.45■□□□□ 0.54
RTN3-205ENST00000356000 CCDC69A6NI79 296 aa18.45■□□□□ 0.54
RTN3-205ENST00000356000 LRCH2Q5VUJ6 765 aa18.45■□□□□ 0.54
RTN3-205ENST00000356000 SARM1Q6SZW1 724 aa18.45■□□□□ 0.54
RTN3-205ENST00000356000 DCCP43146 1447 aa18.45■□□□□ 0.54
RTN3-205ENST00000356000 RIMS2Q9UQ26 1411 aa18.45■□□□□ 0.54
RTN3-205ENST00000356000 FOXR1Q6PIV2 292 aa18.45■□□□□ 0.54
RTN3-205ENST00000356000 MKRN1Q9UHC7 482 aaKnown RBP18.45■□□□□ 0.54
RTN3-205ENST00000356000 PALD1Q9ULE6 856 aa18.45■□□□□ 0.54
RTN3-205ENST00000356000 SYT1P21579 422 aa18.44■□□□□ 0.54
RTN3-205ENST00000356000 CCDC34Q96HJ3 373 aa18.44■□□□□ 0.54
RTN3-205ENST00000356000 RBM28Q9NW13 759 aaKnown RBP18.44■□□□□ 0.54
RTN3-205ENST00000356000 TADA3O75528 432 aa18.43■□□□□ 0.54
RTN3-205ENST00000356000 MTHFSP49914 203 aa18.43■□□□□ 0.54
RTN3-205ENST00000356000 ZNF428Q96B54 188 aa18.43■□□□□ 0.54
RTN3-205ENST00000356000 PDRG1Q9NUG6 133 aa18.43■□□□□ 0.54
RTN3-205ENST00000356000 STK26Q9P289 416 aa18.43■□□□□ 0.54
RTN3-205ENST00000356000 U2AF1L5P0DN76 240 aaPredicted RBP18.42■□□□□ 0.54
RTN3-205ENST00000356000 TMPOP42166 694 aaKnown RBP18.42■□□□□ 0.54
RTN3-205ENST00000356000 U2AF1Q01081 240 aaKnown RBP eCLIP18.42■□□□□ 0.541e-7■■■□□ 14.6
RTN3-205ENST00000356000 ZRSR1Q15695 479 aaKnown RBP18.42■□□□□ 0.54
RTN3-205ENST00000356000 RBM43Q6ZSC3 357 aaKnown RBP18.42■□□□□ 0.54
RTN3-205ENST00000356000 AHDC1Q5TGY3 1603 aaPredicted RBP18.42■□□□□ 0.54
RTN3-205ENST00000356000 EFCAB8A8MWE9 144 aa18.42■□□□□ 0.54
RTN3-205ENST00000356000 ZNF165P49910 485 aa18.42■□□□□ 0.54
RTN3-205ENST00000356000 DNM1Q05193 864 aaKnown RBP18.42■□□□□ 0.54
RTN3-205ENST00000356000 TADA2BQ86TJ2 420 aa18.42■□□□□ 0.54
RTN3-205ENST00000356000 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.42■□□□□ 0.54
RTN3-205ENST00000356000 SRRTQ9BXP5 876 aaKnown RBP18.42■□□□□ 0.54
RTN3-205ENST00000356000 FUT8Q9BYC5 575 aa18.42■□□□□ 0.54
RTN3-205ENST00000356000 ABCC4O15439 1325 aa18.42■□□□□ 0.54
RTN3-205ENST00000356000 H3BQF6 201 aa18.41■□□□□ 0.54
RTN3-205ENST00000356000 CAMK4Q16566 473 aa18.41■□□□□ 0.54
RTN3-205ENST00000356000 DNAAF4Q8WXU2 420 aa18.41■□□□□ 0.54
RTN3-205ENST00000356000 KNDC1Q76NI1 1749 aa18.41■□□□□ 0.54
RTN3-205ENST00000356000 A0A087WUV0 522 aaPredicted RBP18.4■□□□□ 0.54
RTN3-205ENST00000356000 E4F1Q66K89 784 aaPredicted RBP18.4■□□□□ 0.54
RTN3-205ENST00000356000 FAM43BQ6ZT52 329 aaPredicted RBP18.4■□□□□ 0.54
RTN3-205ENST00000356000 PROSER2Q86WR7 435 aaPredicted RBP18.4■□□□□ 0.54
RTN3-205ENST00000356000 PPP1R13BQ96KQ4 1090 aa18.4■□□□□ 0.54
RTN3-205ENST00000356000 TNMDQ9H2S6 317 aa18.4■□□□□ 0.54
RTN3-205ENST00000356000 JCADQ9P266 1359 aa18.4■□□□□ 0.54
RTN3-205ENST00000356000 TTC21BQ7Z4L5 1316 aa18.4■□□□□ 0.54
RTN3-205ENST00000356000 PHLPP1O60346 1717 aa18.4■□□□□ 0.54
RTN3-205ENST00000356000 PSDA5PKW4 1024 aaPredicted RBP18.39■□□□□ 0.54
RTN3-205ENST00000356000 KIF3CO14782 793 aa18.39■□□□□ 0.54
RTN3-205ENST00000356000 CAVIN2O95810 425 aa18.39■□□□□ 0.54
RTN3-205ENST00000356000 C11orf91Q3C1V1 193 aa18.39■□□□□ 0.54
RTN3-205ENST00000356000 CKAP2LQ8IYA6 745 aa18.39■□□□□ 0.54
RTN3-205ENST00000356000 ARFGAP3Q9NP61 516 aa18.39■□□□□ 0.54
RTN3-205ENST00000356000 MAP9Q49MG5 647 aa18.39■□□□□ 0.53
RTN3-205ENST00000356000 LIG1P18858 919 aa18.38■□□□□ 0.53
RTN3-205ENST00000356000 PLEKHF1Q96S99 279 aa18.38■□□□□ 0.53
RTN3-205ENST00000356000 UPF3BQ9BZI7 483 aaKnown RBP18.38■□□□□ 0.53
RTN3-205ENST00000356000 SETBP1Q9Y6X0 1596 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms