RNA–Protein interactions for RNA: ENST00000354725.7

SND1-201, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SND1, Length 3,476 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-201ENST00000354725 NBPF4Q96M43 638 aa13.04□□□□□ -0.32
SND1-201ENST00000354725 GPBP1L1Q9HC44 474 aaPredicted RBP13.04□□□□□ -0.32
SND1-201ENST00000354725 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.04□□□□□ -0.32
SND1-201ENST00000354725 PAPPAQ13219 1627 aa13.04□□□□□ -0.32
SND1-201ENST00000354725 PEX14O75381 377 aa13.04□□□□□ -0.32
SND1-201ENST00000354725 RBM26Q5T8P6 1007 aaKnown RBP13.04□□□□□ -0.32
SND1-201ENST00000354725 MEX3CQ5U5Q3 659 aaKnown RBP13.04□□□□□ -0.32
SND1-201ENST00000354725 EXOC8Q8IYI6 725 aa13.04□□□□□ -0.32
SND1-201ENST00000354725 DCTPP1Q9H773 170 aa13.04□□□□□ -0.32
SND1-201ENST00000354725 QTRT2Q9H974 415 aaKnown RBP13.04□□□□□ -0.32
SND1-201ENST00000354725 ITGB4P16144 1822 aa13.03□□□□□ -0.32
SND1-201ENST00000354725 TNS2Q63HR2 1409 aa13.03□□□□□ -0.32
SND1-201ENST00000354725 K7ELQ4 463 aaPredicted RBP13.03□□□□□ -0.32
SND1-201ENST00000354725 PLEKHM2Q8IWE5 1019 aa13.03□□□□□ -0.32
SND1-201ENST00000354725 DOT1LQ8TEK3 1739 aa13.02□□□□□ -0.32
SND1-201ENST00000354725 RINLQ6ZS11 566 aa13.02□□□□□ -0.32
SND1-201ENST00000354725 APBB1IPQ7Z5R6 666 aaPredicted RBP13.02□□□□□ -0.32
SND1-201ENST00000354725 NASPP49321 788 aaPredicted RBP13.02□□□□□ -0.33
SND1-201ENST00000354725 TMCO4Q5TGY1 634 aa13.02□□□□□ -0.33
SND1-201ENST00000354725 ATL2Q8NHH9 583 aa13.02□□□□□ -0.33
SND1-201ENST00000354725 GABPB1Q06547 395 aaPredicted RBP13.01□□□□□ -0.33
SND1-201ENST00000354725 C8orf58Q8NAV2 365 aa13.01□□□□□ -0.33
SND1-201ENST00000354725 EYA1Q99502 592 aa13.01□□□□□ -0.33
SND1-201ENST00000354725 RBM6P78332 1123 aaKnown RBP13.01□□□□□ -0.33
SND1-201ENST00000354725 JARID2Q92833 1246 aaPredicted RBP13.01□□□□□ -0.33
SND1-201ENST00000354725 IL17RAQ96F46 866 aa13.01□□□□□ -0.33
SND1-201ENST00000354725 FOXD4Q12950 439 aaPredicted RBP13.01□□□□□ -0.33
SND1-201ENST00000354725 SKOR2Q2VWA4 1001 aaPredicted RBP13.01□□□□□ -0.33
SND1-201ENST00000354725 TSC1Q92574 1164 aa13□□□□□ -0.33
SND1-201ENST00000354725 CICQ96RK0 1608 aaPredicted RBP13□□□□□ -0.33
SND1-201ENST00000354725 NBPF20Q3BBV1 942 aa13□□□□□ -0.33
SND1-201ENST00000354725 SPRYD3Q8NCJ5 442 aa13□□□□□ -0.33
SND1-201ENST00000354725 DHX16O60231 1041 aaKnown RBP13□□□□□ -0.33
SND1-201ENST00000354725 AMPHP49418 695 aa13□□□□□ -0.33
SND1-201ENST00000354725 TWISTNBQ3B726 338 aaPredicted RBP13□□□□□ -0.33
SND1-201ENST00000354725 SPTY2D1Q68D10 685 aaPredicted RBP13□□□□□ -0.33
SND1-201ENST00000354725 API5Q9BZZ5 524 aaKnown RBP13□□□□□ -0.33
SND1-201ENST00000354725 CALCOCO1Q9P1Z2 691 aa13□□□□□ -0.33
SND1-201ENST00000354725 CDC45O75419 566 aa12.99□□□□□ -0.33
SND1-201ENST00000354725 NPM3O75607 178 aaKnown RBP12.99□□□□□ -0.33
SND1-201ENST00000354725 CT47A1Q5JQC4 288 aaPredicted RBP12.99□□□□□ -0.33
SND1-201ENST00000354725 TTC22Q5TAA0 569 aa12.99□□□□□ -0.33
SND1-201ENST00000354725 THUMPD2Q9BTF0 503 aaKnown RBP12.99□□□□□ -0.33
SND1-201ENST00000354725 ANKRD45Q5TZF3 282 aa12.99□□□□□ -0.33
SND1-201ENST00000354725 ANKRD44Q8N8A2 993 aa12.99□□□□□ -0.33
SND1-201ENST00000354725 GAS2L2Q8NHY3 880 aa12.99□□□□□ -0.33
SND1-201ENST00000354725 SLFN14P0C7P3 912 aa12.98□□□□□ -0.33
SND1-201ENST00000354725 GTF2F1P35269 517 aaKnown RBP eCLIP12.98□□□□□ -0.333e-6■■■■■ 43.7
SND1-201ENST00000354725 MYCBPQ99417 103 aaPredicted RBP12.98□□□□□ -0.33
SND1-201ENST00000354725 ZKSCAN5Q9Y2L8 839 aa12.98□□□□□ -0.33
SND1-201ENST00000354725 LY75O60449 1722 aa12.98□□□□□ -0.33
SND1-201ENST00000354725 ZNF831Q5JPB2 1677 aa12.98□□□□□ -0.33
SND1-201ENST00000354725 MRC1P22897 1456 aa12.98□□□□□ -0.33
SND1-201ENST00000354725 CHL1O00533 1208 aa12.98□□□□□ -0.33
SND1-201ENST00000354725 MCM5P33992 734 aa12.98□□□□□ -0.33
SND1-201ENST00000354725 EVI5LQ96CN4 794 aa12.98□□□□□ -0.33
SND1-201ENST00000354725 USP26Q9BXU7 913 aa12.98□□□□□ -0.33
SND1-201ENST00000354725 FEZ2Q9UHY8 353 aaPredicted RBP12.98□□□□□ -0.33
SND1-201ENST00000354725 UBR2Q8IWV8 1755 aa12.98□□□□□ -0.33
SND1-201ENST00000354725 RREB1Q92766 1687 aa12.98□□□□□ -0.33
SND1-201ENST00000354725 SALL3Q9BXA9 1300 aa12.98□□□□□ -0.33
SND1-201ENST00000354725 TNNT1P13805 278 aa12.97□□□□□ -0.33
SND1-201ENST00000354725 PDCL2Q8N4E4 241 aa12.97□□□□□ -0.33
SND1-201ENST00000354725 GBP4Q96PP9 640 aa12.97□□□□□ -0.33
SND1-201ENST00000354725 CEP83Q9Y592 693 aa12.97□□□□□ -0.33
SND1-201ENST00000354725 HSP90AB3PQ58FF7 597 aa12.97□□□□□ -0.33
SND1-201ENST00000354725 TMX4Q9H1E5 349 aaPredicted RBP12.97□□□□□ -0.33
SND1-201ENST00000354725 OSBPL3Q9H4L5 887 aa12.97□□□□□ -0.33
SND1-201ENST00000354725 STRN4Q9NRL3 753 aa12.97□□□□□ -0.33
SND1-201ENST00000354725 HMOX1P09601 288 aa12.97□□□□□ -0.33
SND1-201ENST00000354725 ILDR2Q71H61 639 aa12.97□□□□□ -0.33
SND1-201ENST00000354725 RBM42Q9BTD8 480 aaKnown RBP12.97□□□□□ -0.33
SND1-201ENST00000354725 BTAF1O14981 1849 aa12.97□□□□□ -0.33
SND1-201ENST00000354725 RXRBP28702 533 aa12.96□□□□□ -0.33
SND1-201ENST00000354725 KLHL40Q2TBA0 621 aa12.96□□□□□ -0.33
SND1-201ENST00000354725 RBM27Q9P2N5 1060 aaKnown RBP12.96□□□□□ -0.33
SND1-201ENST00000354725 PTPRCP08575 1304 aa12.96□□□□□ -0.33
SND1-201ENST00000354725 TNNT3P45378 269 aaPredicted RBP12.96□□□□□ -0.33
SND1-201ENST00000354725 NCAPGQ9BPX3 1015 aa12.96□□□□□ -0.33
SND1-201ENST00000354725 RABEP1Q15276 862 aa12.96□□□□□ -0.34
SND1-201ENST00000354725 CEP85Q6P2H3 762 aa12.96□□□□□ -0.34
SND1-201ENST00000354725 FEZ1Q99689 392 aa12.96□□□□□ -0.34
SND1-201ENST00000354725 U2AF2P26368 475 aaKnown RBP eCLIP12.95□□□□□ -0.342e-7■□□□□ 11.2
SND1-201ENST00000354725 ZNF445P59923 1031 aa12.95□□□□□ -0.34
SND1-201ENST00000354725 SATB1Q01826 763 aa12.95□□□□□ -0.34
SND1-201ENST00000354725 PRIMPOLQ96LW4 560 aa12.95□□□□□ -0.34
SND1-201ENST00000354725 PXDNLA1KZ92 1463 aa12.95□□□□□ -0.34
SND1-201ENST00000354725 GTF2A1P52655 376 aaPredicted RBP12.95□□□□□ -0.34
SND1-201ENST00000354725 DNAJC14Q6Y2X3 702 aaPredicted RBP12.95□□□□□ -0.34
SND1-201ENST00000354725 RPAP2Q8IXW5 612 aaPredicted RBP12.95□□□□□ -0.34
SND1-201ENST00000354725 RIPOR2Q9Y4F9 1068 aa12.95□□□□□ -0.34
SND1-201ENST00000354725 OGFRQ9NZT2 677 aa12.94□□□□□ -0.34
SND1-201ENST00000354725 TTC36A6NLP5 189 aa12.94□□□□□ -0.34
SND1-201ENST00000354725 KDM3BQ7LBC6 1761 aa12.94□□□□□ -0.34
SND1-201ENST00000354725 BAG4O95429 457 aaKnown RBP12.94□□□□□ -0.34
SND1-201ENST00000354725 HMGN5P82970 282 aaKnown RBP12.94□□□□□ -0.34
SND1-201ENST00000354725 FAM98CQ17RN3 349 aaKnown RBP12.94□□□□□ -0.34
SND1-201ENST00000354725 TOM1L2Q6ZVM7 507 aa12.94□□□□□ -0.34
SND1-201ENST00000354725 USHBP1Q8N6Y0 703 aa12.94□□□□□ -0.34
SND1-201ENST00000354725 RNF217Q8TC41 542 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 375.6 ms