RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CNGA4Q8IV77 575 aa14.4□□□□□ -0.11
COL6A3-203ENST00000353578 TRIM14Q14142 442 aa14.39□□□□□ -0.11
COL6A3-203ENST00000353578 CEP85LQ5SZL2 805 aa14.39□□□□□ -0.11
COL6A3-203ENST00000353578 PPP1R1BQ9UD71 204 aaPredicted RBP14.39□□□□□ -0.11
COL6A3-203ENST00000353578 KCNG4Q8TDN1 519 aa14.39□□□□□ -0.11
COL6A3-203ENST00000353578 MTRF1LQ9UGC7 380 aaKnown RBP14.39□□□□□ -0.11
COL6A3-203ENST00000353578 TIAM1Q13009 1591 aa14.39□□□□□ -0.11
COL6A3-203ENST00000353578 TNNC1P63316 161 aa14.39□□□□□ -0.11
COL6A3-203ENST00000353578 JAKMIP1Q96N16 626 aaKnown RBP14.39□□□□□ -0.11
COL6A3-203ENST00000353578 NUCKS1Q9H1E3 243 aaKnown RBP14.39□□□□□ -0.11
COL6A3-203ENST00000353578 GOLGA6CA6NDK9 693 aa14.39□□□□□ -0.11
COL6A3-203ENST00000353578 RNF8O76064 485 aa14.39□□□□□ -0.11
COL6A3-203ENST00000353578 GOLGA6DP0CG33 693 aa14.39□□□□□ -0.11
COL6A3-203ENST00000353578 PHLDB3Q6NSJ2 640 aa14.39□□□□□ -0.11
COL6A3-203ENST00000353578 GOLGA6AQ9NYA3 693 aa14.39□□□□□ -0.11
COL6A3-203ENST00000353578 MIER3Q7Z3K6 550 aa14.39□□□□□ -0.11
COL6A3-203ENST00000353578 AMPD3Q01432 767 aa14.39□□□□□ -0.11
COL6A3-203ENST00000353578 FYB2Q5VWT5 728 aa14.39□□□□□ -0.11
COL6A3-203ENST00000353578 TAOK1Q7L7X3 1001 aa14.39□□□□□ -0.11
COL6A3-203ENST00000353578 SF3B2Q13435 895 aaKnown RBP14.38□□□□□ -0.11
COL6A3-203ENST00000353578 PAF1Q8N7H5 531 aa14.38□□□□□ -0.11
COL6A3-203ENST00000353578 INTS4Q96HW7 963 aaKnown RBP14.38□□□□□ -0.11
COL6A3-203ENST00000353578 HOMER2Q9NSB8 354 aa14.38□□□□□ -0.11
COL6A3-203ENST00000353578 CCDC69A6NI79 296 aa14.38□□□□□ -0.11
COL6A3-203ENST00000353578 INTS8Q75QN2 995 aaKnown RBP14.38□□□□□ -0.11
COL6A3-203ENST00000353578 SMC5Q8IY18 1101 aa14.38□□□□□ -0.11
COL6A3-203ENST00000353578 MTMR3Q13615 1198 aa14.38□□□□□ -0.11
COL6A3-203ENST00000353578 LARP1Q6PKG0 1096 aaKnown RBP14.38□□□□□ -0.11
COL6A3-203ENST00000353578 PPP1R14CQ8TAE6 165 aa14.38□□□□□ -0.11
COL6A3-203ENST00000353578 PDCD7Q8N8D1 485 aaKnown RBP14.38□□□□□ -0.11
COL6A3-203ENST00000353578 ATP2A2P16615 1042 aaKnown RBP14.38□□□□□ -0.11
COL6A3-203ENST00000353578 RAB3GAP1Q15042 981 aa14.38□□□□□ -0.11
COL6A3-203ENST00000353578 KIAA1524Q8TCG1 905 aa14.38□□□□□ -0.11
COL6A3-203ENST00000353578 IBTKQ9P2D0 1353 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-203ENST00000353578 GPR161Q8N6U8 529 aaKnown RBP14.38□□□□□ -0.11
COL6A3-203ENST00000353578 TBC1D31Q96DN5 1066 aa14.37□□□□□ -0.11
COL6A3-203ENST00000353578 GFM2Q969S9 779 aaKnown RBP14.37□□□□□ -0.11
COL6A3-203ENST00000353578 RAB3IL1Q8TBN0 382 aa14.37□□□□□ -0.11
COL6A3-203ENST00000353578 G3V3G9 751 aa14.37□□□□□ -0.11
COL6A3-203ENST00000353578 ZBTB16Q05516 673 aa14.37□□□□□ -0.11
COL6A3-203ENST00000353578 DCAF8Q5TAQ9 597 aa14.37□□□□□ -0.11
COL6A3-203ENST00000353578 EFCAB2Q5VUJ9 269 aa14.37□□□□□ -0.11
COL6A3-203ENST00000353578 SEPT2Q15019 361 aa14.37□□□□□ -0.11
COL6A3-203ENST00000353578 FHOD3Q2V2M9 1422 aa14.37□□□□□ -0.11
COL6A3-203ENST00000353578 NPHP3Q7Z494 1330 aa14.36□□□□□ -0.11
COL6A3-203ENST00000353578 LRRD1A4D1F6 860 aa14.36□□□□□ -0.11
COL6A3-203ENST00000353578 EIF2AK4Q9P2K8 1649 aaKnown RBP14.36□□□□□ -0.11
COL6A3-203ENST00000353578 PPP2R5EQ16537 467 aa14.36□□□□□ -0.11
COL6A3-203ENST00000353578 HMGB3O15347 200 aaKnown RBP14.36□□□□□ -0.11
COL6A3-203ENST00000353578 GNL3LQ9NVN8 582 aaKnown RBP14.36□□□□□ -0.11
COL6A3-203ENST00000353578 SMARCA4P51532 1647 aa14.36□□□□□ -0.11
COL6A3-203ENST00000353578 TAF7Q15545 349 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-203ENST00000353578 MXRA7P84157 204 aa14.36□□□□□ -0.11
COL6A3-203ENST00000353578 LRRC23Q53EV4 343 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-203ENST00000353578 NKIRAS1Q9NYS0 192 aa14.36□□□□□ -0.11
COL6A3-203ENST00000353578 MAP3K1Q13233 1512 aa14.36□□□□□ -0.11
COL6A3-203ENST00000353578 RALGAPBQ86X10 1494 aa14.35□□□□□ -0.11
COL6A3-203ENST00000353578 APBA1Q02410 837 aa14.35□□□□□ -0.11
COL6A3-203ENST00000353578 CCDC62Q6P9F0 684 aa14.35□□□□□ -0.11
COL6A3-203ENST00000353578 DNAI1Q9UI46 699 aa14.35□□□□□ -0.11
COL6A3-203ENST00000353578 TSKSQ9UJT2 592 aa14.35□□□□□ -0.11
COL6A3-203ENST00000353578 NCAPD3P42695 1498 aa14.35□□□□□ -0.11
COL6A3-203ENST00000353578 GLRX3O76003 335 aaKnown RBP14.35□□□□□ -0.11
COL6A3-203ENST00000353578 ZNF445P59923 1031 aa14.35□□□□□ -0.11
COL6A3-203ENST00000353578 CASKIN1Q8WXD9 1431 aa14.35□□□□□ -0.11
COL6A3-203ENST00000353578 PDCD2Q16342 344 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-203ENST00000353578 FOXD1Q16676 465 aa14.35□□□□□ -0.11
COL6A3-203ENST00000353578 WASHC4Q2M389 1173 aa14.35□□□□□ -0.11
COL6A3-203ENST00000353578 AK9Q5TCS8 1911 aa14.35□□□□□ -0.11
COL6A3-203ENST00000353578 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-203ENST00000353578 HIP1RO75146 1068 aa14.35□□□□□ -0.11
COL6A3-203ENST00000353578 CEBPZQ03701 1054 aaKnown RBP14.35□□□□□ -0.11
COL6A3-203ENST00000353578 RAB11FIP4Q86YS3 637 aa14.35□□□□□ -0.11
COL6A3-203ENST00000353578 SYT1P21579 422 aa14.35□□□□□ -0.11
COL6A3-203ENST00000353578 CHMP4BP1P59074 171 aa14.35□□□□□ -0.11
COL6A3-203ENST00000353578 CAMSAP2Q08AD1 1489 aa14.34□□□□□ -0.11
COL6A3-203ENST00000353578 GAS2L2Q8NHY3 880 aa14.34□□□□□ -0.11
COL6A3-203ENST00000353578 EIF2AQ9BY44 585 aaKnown RBP14.34□□□□□ -0.11
COL6A3-203ENST00000353578 TRMT1Q9NXH9 659 aaKnown RBP14.34□□□□□ -0.11
COL6A3-203ENST00000353578 ACTN2P35609 894 aa14.34□□□□□ -0.11
COL6A3-203ENST00000353578 CAMK4Q16566 473 aa14.34□□□□□ -0.11
COL6A3-203ENST00000353578 CCDC92Q53HC0 331 aaPredicted RBP14.34□□□□□ -0.11
COL6A3-203ENST00000353578 SNCBQ16143 134 aa14.34□□□□□ -0.11
COL6A3-203ENST00000353578 TTF2Q9UNY4 1162 aaKnown RBP14.34□□□□□ -0.11
COL6A3-203ENST00000353578 UBASH3AP57075 661 aa14.34□□□□□ -0.11
COL6A3-203ENST00000353578 PPP2R3AQ06190 1150 aa14.34□□□□□ -0.11
COL6A3-203ENST00000353578 ZNF287Q9HBT7 754 aa14.34□□□□□ -0.11
COL6A3-203ENST00000353578 IFT20Q8IY31 132 aa14.34□□□□□ -0.11
COL6A3-203ENST00000353578 KIF5AQ12840 1032 aa14.33□□□□□ -0.12
COL6A3-203ENST00000353578 NBPF9Q3BBW0 867 aa14.33□□□□□ -0.12
COL6A3-203ENST00000353578 CCDC102BQ68D86 513 aa14.33□□□□□ -0.12
COL6A3-203ENST00000353578 CABS1Q96KC9 395 aa14.33□□□□□ -0.12
COL6A3-203ENST00000353578 RMDN2Q96LZ7 410 aa14.33□□□□□ -0.12
COL6A3-203ENST00000353578 NUF2Q9BZD4 464 aa14.33□□□□□ -0.12
COL6A3-203ENST00000353578 PFDN1O60925 122 aa14.33□□□□□ -0.12
COL6A3-203ENST00000353578 MAP7D1Q3KQU3 841 aa14.33□□□□□ -0.12
COL6A3-203ENST00000353578 RASEFQ8IZ41 740 aa14.33□□□□□ -0.12
COL6A3-203ENST00000353578 FAM71BQ8TC56 605 aa14.33□□□□□ -0.12
COL6A3-203ENST00000353578 ADAMTS8Q9UP79 889 aa14.33□□□□□ -0.12
COL6A3-203ENST00000353578 SURF6O75683 361 aaKnown RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms