RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SPATA32Q96LK8 384 aa8.03□□□□□ -1.12
VPS39-202ENST00000348544 ATF5Q9Y2D1 282 aaPredicted RBP8.03□□□□□ -1.12
VPS39-202ENST00000348544 USP16Q9Y5T5 823 aa8.03□□□□□ -1.12
VPS39-202ENST00000348544 NPHP3Q7Z494 1330 aa8.03□□□□□ -1.12
VPS39-202ENST00000348544 C3P01024 1663 aa8.03□□□□□ -1.12
VPS39-202ENST00000348544 RIMS1Q86UR5 1692 aaKnown RBP8.03□□□□□ -1.12
VPS39-202ENST00000348544 RGPD1P0DJD0 1748 aa8.03□□□□□ -1.12
VPS39-202ENST00000348544 MON2Q7Z3U7 1717 aa8.03□□□□□ -1.12
VPS39-202ENST00000348544 CCDC69A6NI79 296 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 RIMBP3CA6NJZ7 1639 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 RIMBP3BA6NNM3 1639 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 ADCY9O60503 1353 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 SURF6O75683 361 aaKnown RBP8.02□□□□□ -1.13
VPS39-202ENST00000348544 SLU7O95391 586 aaKnown RBP8.02□□□□□ -1.13
VPS39-202ENST00000348544 HNRNPH2P55795 449 aaKnown RBP8.02□□□□□ -1.13
VPS39-202ENST00000348544 N4BP2Q86UW6 1770 aaPredicted RBP8.02□□□□□ -1.13
VPS39-202ENST00000348544 CNTROBQ8N137 903 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 CCAR2Q8N163 923 aaKnown RBP8.02□□□□□ -1.13
VPS39-202ENST00000348544 NECTIN2Q92692 538 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 MRFAP1L1Q96HT8 127 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 TRERF1Q96PN7 1200 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 TM6SF1Q9BZW5 370 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 SLC52A1Q9NWF4 448 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 RIMBP3Q9UFD9 1639 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 CYP46A1Q9Y6A2 500 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 PEAK1Q9H792 1746 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 POLA2Q14181 598 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 ERCC6LQ2NKX8 1250 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 LARP1Q6PKG0 1096 aaKnown RBP8.02□□□□□ -1.13
VPS39-202ENST00000348544 PPP1R42Q7Z4L9 355 aa8.02□□□□□ -1.13
VPS39-202ENST00000348544 DNAJC2Q99543 621 aaKnown RBP8.02□□□□□ -1.13
VPS39-202ENST00000348544 NOL10Q9BSC4 688 aaKnown RBP8.02□□□□□ -1.13
VPS39-202ENST00000348544 ADGRL3Q9HAR2 1447 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 A0A087WWV3 80 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 PLA2G4AP47712 749 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 FAM193AP78312 1265 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 NECTIN1Q15223 517 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 STK31Q9BXU1 1019 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 SCAND2PQ9GZW5 306 aaPredicted RBP8.01□□□□□ -1.13
VPS39-202ENST00000348544 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.01□□□□□ -1.13
VPS39-202ENST00000348544 CHD2O14647 1828 aaKnown RBP8.01□□□□□ -1.13
VPS39-202ENST00000348544 GOLGA6L4A6NEF3 574 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 NEMFO60524 1076 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 RAB11FIP3O75154 756 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 UBTFL1P0CB47 393 aaPredicted RBP8.01□□□□□ -1.13
VPS39-202ENST00000348544 CLCN6P51797 869 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 MTHFSDQ2M296 383 aaKnown RBP8.01□□□□□ -1.13
VPS39-202ENST00000348544 HSP90AB2PQ58FF8 381 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 FILIP1Q7Z7B0 1213 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 CREBRFQ8IUR6 639 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 TCEANC2Q96MN5 208 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 L2HGDHQ9H9P8 463 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 KCND1Q9NSA2 647 aa8.01□□□□□ -1.13
VPS39-202ENST00000348544 WASLO00401 505 aaPredicted RBP8□□□□□ -1.13
VPS39-202ENST00000348544 PNMA6AP0CW24 399 aaPredicted RBP8□□□□□ -1.13
VPS39-202ENST00000348544 NFATC2IPQ8NCF5 419 aa8□□□□□ -1.13
VPS39-202ENST00000348544 BICD2Q8TD16 824 aa8□□□□□ -1.13
VPS39-202ENST00000348544 SYTL4Q96C24 671 aaPredicted RBP8□□□□□ -1.13
VPS39-202ENST00000348544 RNF39Q9H2S5 420 aa8□□□□□ -1.13
VPS39-202ENST00000348544 TAF6LQ9Y6J9 622 aa8□□□□□ -1.13
VPS39-202ENST00000348544 ITSN1Q15811 1721 aa8□□□□□ -1.13
VPS39-202ENST00000348544 USP42Q9H9J4 1324 aaKnown RBP8□□□□□ -1.13
VPS39-202ENST00000348544 BMS1Q14692 1282 aaKnown RBP8□□□□□ -1.13
VPS39-202ENST00000348544 CCDC93Q567U6 631 aa8□□□□□ -1.13
VPS39-202ENST00000348544 DHX40Q8IX18 779 aaKnown RBP8□□□□□ -1.13
VPS39-202ENST00000348544 TRIM34Q9BYJ4 488 aa8□□□□□ -1.13
VPS39-202ENST00000348544 FEZ2Q9UHY8 353 aaPredicted RBP8□□□□□ -1.13
VPS39-202ENST00000348544 MAP3K5Q99683 1374 aa8□□□□□ -1.13
VPS39-202ENST00000348544 MAP3K19Q56UN5 1328 aa7.99□□□□□ -1.13
VPS39-202ENST00000348544 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.99□□□□□ -1.13
VPS39-202ENST00000348544 GOLGA6L19H0YKK7 550 aa7.99□□□□□ -1.13
VPS39-202ENST00000348544 RAD51AP2Q09MP3 1159 aa7.99□□□□□ -1.13
VPS39-202ENST00000348544 E4F1Q66K89 784 aaPredicted RBP7.99□□□□□ -1.13
VPS39-202ENST00000348544 CREB3L3Q68CJ9 461 aa7.99□□□□□ -1.13
VPS39-202ENST00000348544 NUDT16Q96DE0 195 aaKnown RBP7.99□□□□□ -1.13
VPS39-202ENST00000348544 RBM8AQ9Y5S9 174 aaKnown RBP7.99□□□□□ -1.13
VPS39-202ENST00000348544 PXDNLA1KZ92 1463 aa7.99□□□□□ -1.13
VPS39-202ENST00000348544 AKAP12Q02952 1782 aa7.99□□□□□ -1.13
VPS39-202ENST00000348544 SRGAP3O43295 1099 aa7.99□□□□□ -1.13
VPS39-202ENST00000348544 ZRANB2O95218 330 aaKnown RBP eCLIP7.99□□□□□ -1.13
VPS39-202ENST00000348544 PDCP20941 246 aa7.99□□□□□ -1.13
VPS39-202ENST00000348544 TOB2Q14106 344 aaPredicted RBP7.99□□□□□ -1.13
VPS39-202ENST00000348544 NBPF11Q86T75 865 aa7.99□□□□□ -1.13
VPS39-202ENST00000348544 STAG3Q9UJ98 1225 aa7.99□□□□□ -1.13
VPS39-202ENST00000348544 CAVIN2O95810 425 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 RESTQ13127 1097 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 RNF20Q5VTR2 975 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 CCDC30Q5VVM6 783 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 SAMD1Q6SPF0 538 aaPredicted RBP7.98□□□□□ -1.13
VPS39-202ENST00000348544 NEK11Q8NG66 645 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 PPP1R13BQ96KQ4 1090 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 DIP2CQ9Y2E4 1556 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 NPHP4O75161 1426 aaPredicted RBP7.98□□□□□ -1.13
VPS39-202ENST00000348544 SLC27A2O14975 620 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 JAK2O60674 1132 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 GLRX3O76003 335 aaKnown RBP7.98□□□□□ -1.13
VPS39-202ENST00000348544 IFIT2P09913 472 aaKnown RBP7.98□□□□□ -1.13
VPS39-202ENST00000348544 NBPF7P0C2Y1 421 aaPredicted RBP7.98□□□□□ -1.13
VPS39-202ENST00000348544 SNW1Q13573 536 aaKnown RBP7.98□□□□□ -1.13
VPS39-202ENST00000348544 STX1AQ16623 288 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 194.8 ms