RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 SPATA31A3Q5VYP0 1347 aa17.93■□□□□ 0.46
VIPAS39-202ENST00000343765 EDC3Q96F86 508 aaKnown RBP17.93■□□□□ 0.46
VIPAS39-202ENST00000343765 ANO8Q9HCE9 1232 aaPredicted RBP17.93■□□□□ 0.46
VIPAS39-202ENST00000343765 LMTK3Q96Q04 1460 aa17.93■□□□□ 0.46
VIPAS39-202ENST00000343765 LARGE1O95461 756 aa17.92■□□□□ 0.46
VIPAS39-202ENST00000343765 LIMCH1Q9UPQ0 1083 aa17.92■□□□□ 0.46
VIPAS39-202ENST00000343765 PRIM1P49642 420 aaKnown RBP17.92■□□□□ 0.46
VIPAS39-202ENST00000343765 CCDC9Q9Y3X0 531 aaKnown RBP17.92■□□□□ 0.46
VIPAS39-202ENST00000343765 CRYBG1Q9Y4K1 1723 aa17.92■□□□□ 0.46
VIPAS39-202ENST00000343765 CCDC171Q6TFL3 1326 aa17.91■□□□□ 0.46
VIPAS39-202ENST00000343765 A0A087WZG4 1122 aa17.91■□□□□ 0.46
VIPAS39-202ENST00000343765 SYCE3A1L190 88 aa17.91■□□□□ 0.46
VIPAS39-202ENST00000343765 RBM8AQ9Y5S9 174 aaKnown RBP17.91■□□□□ 0.46
VIPAS39-202ENST00000343765 NDUFB9Q9Y6M9 179 aa17.91■□□□□ 0.46
VIPAS39-202ENST00000343765 COL18A1P39060 1754 aa17.91■□□□□ 0.46
VIPAS39-202ENST00000343765 A0A0D9SFI3 127 aa17.91■□□□□ 0.46
VIPAS39-202ENST00000343765 TOM1L2Q6ZVM7 507 aa17.91■□□□□ 0.46
VIPAS39-202ENST00000343765 PRDM11Q9NQV5 511 aa17.91■□□□□ 0.46
VIPAS39-202ENST00000343765 PDRG1Q9NUG6 133 aa17.91■□□□□ 0.46
VIPAS39-202ENST00000343765 WDR33Q9C0J8 1336 aaKnown RBP17.91■□□□□ 0.46
VIPAS39-202ENST00000343765 CCDC83Q8IWF9 413 aa17.91■□□□□ 0.46
VIPAS39-202ENST00000343765 CHMP3Q9Y3E7 222 aa17.91■□□□□ 0.46
VIPAS39-202ENST00000343765 DCCP43146 1447 aa17.9■□□□□ 0.46
VIPAS39-202ENST00000343765 RPAP1Q9BWH6 1393 aaPredicted RBP17.9■□□□□ 0.46
VIPAS39-202ENST00000343765 RBSNQ9H1K0 784 aa17.9■□□□□ 0.46
VIPAS39-202ENST00000343765 TFCP2Q12800 502 aa17.9■□□□□ 0.46
VIPAS39-202ENST00000343765 ANP32BQ92688 251 aaKnown RBP17.9■□□□□ 0.46
VIPAS39-202ENST00000343765 ERBB4Q15303 1308 aa17.89■□□□□ 0.45
VIPAS39-202ENST00000343765 SMC3Q9UQE7 1217 aa17.89■□□□□ 0.45
VIPAS39-202ENST00000343765 CYP46A1Q9Y6A2 500 aa17.89■□□□□ 0.45
VIPAS39-202ENST00000343765 COL9A3Q14050 684 aaPredicted RBP17.89■□□□□ 0.45
VIPAS39-202ENST00000343765 CREB3L3Q68CJ9 461 aa17.89■□□□□ 0.45
VIPAS39-202ENST00000343765 BRINP3Q76B58 766 aa17.89■□□□□ 0.45
VIPAS39-202ENST00000343765 GADD45BO75293 160 aaPredicted RBP17.88■□□□□ 0.45
VIPAS39-202ENST00000343765 ZKSCAN1P17029 563 aaPredicted RBP17.88■□□□□ 0.45
VIPAS39-202ENST00000343765 PTPN12Q05209 780 aaKnown RBP17.88■□□□□ 0.45
VIPAS39-202ENST00000343765 NECTIN1Q15223 517 aa17.88■□□□□ 0.45
VIPAS39-202ENST00000343765 TCEANC2Q96MN5 208 aa17.88■□□□□ 0.45
VIPAS39-202ENST00000343765 DBNLQ9UJU6 430 aaKnown RBP17.88■□□□□ 0.45
VIPAS39-202ENST00000343765 HIP1O00291 1037 aa17.87■□□□□ 0.45
VIPAS39-202ENST00000343765 MBD3O95983 291 aa17.87■□□□□ 0.45
VIPAS39-202ENST00000343765 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.87■□□□□ 0.45
VIPAS39-202ENST00000343765 ESPNB1AK53 854 aa17.87■□□□□ 0.45
VIPAS39-202ENST00000343765 RFX5P48382 616 aaPredicted RBP17.87■□□□□ 0.45
VIPAS39-202ENST00000343765 ZNF589Q86UQ0 364 aaPredicted RBP17.87■□□□□ 0.45
VIPAS39-202ENST00000343765 USP48Q86UV5 1035 aa17.87■□□□□ 0.45
VIPAS39-202ENST00000343765 DNAJC2Q99543 621 aaKnown RBP17.87■□□□□ 0.45
VIPAS39-202ENST00000343765 MRC1P22897 1456 aa17.87■□□□□ 0.45
VIPAS39-202ENST00000343765 NBPF26B4DH59 902 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 SYT1P21579 422 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 CCDC173Q0VFZ6 552 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 TNNI3KQ59H18 835 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 NBPF14Q5TI25 921 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 NBPF10Q6P3W6 841 aaKnown RBP17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 TTLL7Q6ZT98 887 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 NBPF15Q8N660 670 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 NECAB1Q8N987 351 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 ZCRB1Q8TBF4 217 aaKnown RBP17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 ZSWIM6Q9HCJ5 1215 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 COPRSQ9NQ92 184 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 TAF6LQ9Y6J9 622 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 FPGT-TNNI3KV9GXZ4 949 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 CHGBP05060 677 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 VPS53Q5VIR6 699 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 LMBR1LQ6UX01 489 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 PLBD2Q8NHP8 589 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 STRN4Q9NRL3 753 aa17.86■□□□□ 0.45
VIPAS39-202ENST00000343765 SLC27A2O14975 620 aa17.85■□□□□ 0.45
VIPAS39-202ENST00000343765 STX6O43752 255 aa17.85■□□□□ 0.45
VIPAS39-202ENST00000343765 MAP4K1Q92918 833 aa17.85■□□□□ 0.45
VIPAS39-202ENST00000343765 CNPY2Q9Y2B0 182 aa17.85■□□□□ 0.45
VIPAS39-202ENST00000343765 CPDO75976 1380 aa17.85■□□□□ 0.45
VIPAS39-202ENST00000343765 A1BGP04217 495 aa17.85■□□□□ 0.45
VIPAS39-202ENST00000343765 ZSCAN22P10073 491 aaPredicted RBP17.85■□□□□ 0.45
VIPAS39-202ENST00000343765 GJB2P29033 226 aa17.85■□□□□ 0.45
VIPAS39-202ENST00000343765 DBNDD2Q9BQY9 259 aa17.85■□□□□ 0.45
VIPAS39-202ENST00000343765 LRSAM1Q6UWE0 723 aa17.85■□□□□ 0.45
VIPAS39-202ENST00000343765 RNF214Q8ND24 703 aa17.85■□□□□ 0.45
VIPAS39-202ENST00000343765 ZBTB3Q9H5J0 574 aa17.85■□□□□ 0.45
VIPAS39-202ENST00000343765 ME3Q16798 604 aa17.84■□□□□ 0.45
VIPAS39-202ENST00000343765 ZNF330Q9Y3S2 320 aaPredicted RBP17.84■□□□□ 0.45
VIPAS39-202ENST00000343765 WDR17Q8IZU2 1322 aa17.84■□□□□ 0.45
VIPAS39-202ENST00000343765 PCDH11XQ9BZA7 1347 aa17.84■□□□□ 0.45
VIPAS39-202ENST00000343765 PCDH11YQ9BZA8 1340 aa17.84■□□□□ 0.45
VIPAS39-202ENST00000343765 RABL6Q3YEC7 729 aaPredicted RBP17.83■□□□□ 0.45
VIPAS39-202ENST00000343765 TM6SF1Q9BZW5 370 aa17.83■□□□□ 0.45
VIPAS39-202ENST00000343765 AFDNP55196 1824 aaKnown RBP17.83■□□□□ 0.44
VIPAS39-202ENST00000343765 CLCN1P35523 988 aa17.83■□□□□ 0.44
VIPAS39-202ENST00000343765 KCNB2Q92953 911 aa17.83■□□□□ 0.44
VIPAS39-202ENST00000343765 TPCN1Q9ULQ1 816 aa17.83■□□□□ 0.44
VIPAS39-202ENST00000343765 PKD1L3Q7Z443 1732 aa17.83■□□□□ 0.44
VIPAS39-202ENST00000343765 FIBPO43427 364 aa17.82■□□□□ 0.44
VIPAS39-202ENST00000343765 ST3GAL1Q11201 340 aa17.82■□□□□ 0.44
VIPAS39-202ENST00000343765 CCDC129Q6ZRS4 1044 aa17.82■□□□□ 0.44
VIPAS39-202ENST00000343765 DDX46Q7L014 1031 aaKnown RBP17.82■□□□□ 0.44
VIPAS39-202ENST00000343765 PPP1R9BQ96SB3 815 aa17.82■□□□□ 0.44
VIPAS39-202ENST00000343765 VPS37CA5D8V6 355 aaPredicted RBP17.82■□□□□ 0.44
VIPAS39-202ENST00000343765 CASP7P55210 303 aa17.82■□□□□ 0.44
VIPAS39-202ENST00000343765 ATP5JP18859 108 aa17.81■□□□□ 0.44
VIPAS39-202ENST00000343765 NEUROD6Q96NK8 337 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms