RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 IQCB1Q15051 598 aa21.72■■□□□ 1.07
SMPD1-201ENST00000342245 OSBPL5Q9H0X9 879 aaPredicted RBP21.72■■□□□ 1.07
SMPD1-201ENST00000342245 TMX1Q9H3N1 280 aa21.72■■□□□ 1.07
SMPD1-201ENST00000342245 DEF6Q9H4E7 631 aa21.72■■□□□ 1.07
SMPD1-201ENST00000342245 ARHGEF28Q8N1W1 1705 aaKnown RBP21.72■■□□□ 1.07
SMPD1-201ENST00000342245 VPS37CA5D8V6 355 aaPredicted RBP21.71■■□□□ 1.07
SMPD1-201ENST00000342245 FYB1O15117 783 aa21.71■■□□□ 1.07
SMPD1-201ENST00000342245 CTAGE5O15320 804 aa21.71■■□□□ 1.07
SMPD1-201ENST00000342245 GYS2P54840 703 aa21.71■■□□□ 1.07
SMPD1-201ENST00000342245 LEKR1Q6ZMV7 388 aa21.71■■□□□ 1.07
SMPD1-201ENST00000342245 CCDC150Q8NCX0 1101 aa21.71■■□□□ 1.07
SMPD1-201ENST00000342245 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.71■■□□□ 1.07
SMPD1-201ENST00000342245 MEIS3Q99687 375 aa21.71■■□□□ 1.07
SMPD1-201ENST00000342245 VPS53Q5VIR6 699 aa21.71■■□□□ 1.07
SMPD1-201ENST00000342245 MLH3Q9UHC1 1453 aa21.71■■□□□ 1.07
SMPD1-201ENST00000342245 OSCARQ8IYS5 282 aa21.7■■□□□ 1.06
SMPD1-201ENST00000342245 MNS1Q8NEH6 495 aa21.7■■□□□ 1.06
SMPD1-201ENST00000342245 SENP3Q9H4L4 574 aaPredicted RBP21.7■■□□□ 1.06
SMPD1-201ENST00000342245 HYPKQ9NX55 129 aa21.7■■□□□ 1.06
SMPD1-201ENST00000342245 YTHDC2Q9H6S0 1430 aaKnown RBP21.7■■□□□ 1.06
SMPD1-201ENST00000342245 RIMS2Q9UQ26 1411 aa21.7■■□□□ 1.06
SMPD1-201ENST00000342245 ATP2B1P20020 1258 aa21.69■■□□□ 1.06
SMPD1-201ENST00000342245 STX1AQ16623 288 aa21.69■■□□□ 1.06
SMPD1-201ENST00000342245 PPP1R13BQ96KQ4 1090 aa21.69■■□□□ 1.06
SMPD1-201ENST00000342245 SPATA32Q96LK8 384 aa21.69■■□□□ 1.06
SMPD1-201ENST00000342245 PPP6R1Q9UPN7 881 aa21.69■■□□□ 1.06
SMPD1-201ENST00000342245 RPGRIP1LQ68CZ1 1315 aa21.69■■□□□ 1.06
SMPD1-201ENST00000342245 RPS6KA5O75582 802 aa21.69■■□□□ 1.06
SMPD1-201ENST00000342245 THUMPD2Q9BTF0 503 aaKnown RBP21.69■■□□□ 1.06
SMPD1-201ENST00000342245 HECW2Q9P2P5 1572 aa21.69■■□□□ 1.06
SMPD1-201ENST00000342245 CCDC83Q8IWF9 413 aa21.68■■□□□ 1.06
SMPD1-201ENST00000342245 PPM1EQ8WY54 764 aa21.68■■□□□ 1.06
SMPD1-201ENST00000342245 EXOC6BQ9Y2D4 811 aa21.68■■□□□ 1.06
SMPD1-201ENST00000342245 BECN2A8MW95 431 aa21.68■■□□□ 1.06
SMPD1-201ENST00000342245 TM6SF1Q9BZW5 370 aa21.68■■□□□ 1.06
SMPD1-201ENST00000342245 BCCIPQ9P287 314 aaKnown RBP eCLIP21.68■■□□□ 1.06
SMPD1-201ENST00000342245 ABCC3O15438 1527 aa21.68■■□□□ 1.06
SMPD1-201ENST00000342245 KIF20BQ96Q89 1820 aa21.67■■□□□ 1.06
SMPD1-201ENST00000342245 CCT4P50991 539 aaKnown RBP21.67■■□□□ 1.06
SMPD1-201ENST00000342245 ARID5BQ14865 1188 aa21.67■■□□□ 1.06
SMPD1-201ENST00000342245 LARP1BQ659C4 914 aaKnown RBP21.67■■□□□ 1.06
SMPD1-201ENST00000342245 TTC41PQ6P2S7 1318 aa21.67■■□□□ 1.06
SMPD1-201ENST00000342245 SGSM2O43147 1006 aa21.67■■□□□ 1.06
SMPD1-201ENST00000342245 TBC1D8O95759 1140 aa21.67■■□□□ 1.06
SMPD1-201ENST00000342245 JAKMIP3Q5VZ66 844 aa21.67■■□□□ 1.06
SMPD1-201ENST00000342245 CCDC91Q7Z6B0 441 aa21.67■■□□□ 1.06
SMPD1-201ENST00000342245 SUGP1Q8IWZ8 645 aaKnown RBP21.67■■□□□ 1.06
SMPD1-201ENST00000342245 REXO1L1PQ8IX06 675 aa21.67■■□□□ 1.06
SMPD1-201ENST00000342245 CHMP3Q9Y3E7 222 aa21.67■■□□□ 1.06
SMPD1-201ENST00000342245 CEP83Q9Y592 693 aa21.67■■□□□ 1.06
SMPD1-201ENST00000342245 TADA3O75528 432 aa21.66■■□□□ 1.06
SMPD1-201ENST00000342245 GPR161Q8N6U8 529 aaKnown RBP21.66■■□□□ 1.06
SMPD1-201ENST00000342245 PHACTR3Q96KR7 559 aa21.66■■□□□ 1.06
SMPD1-201ENST00000342245 GNAI2P04899 355 aa21.66■■□□□ 1.06
SMPD1-201ENST00000342245 CCDC172P0C7W6 258 aa21.66■■□□□ 1.06
SMPD1-201ENST00000342245 ETF1P62495 437 aaKnown RBP21.66■■□□□ 1.06
SMPD1-201ENST00000342245 MLECQ14165 292 aa21.66■■□□□ 1.06
SMPD1-201ENST00000342245 LRRFIP1Q32MZ4 808 aaKnown RBP21.66■■□□□ 1.06
SMPD1-201ENST00000342245 SWT1Q5T5J6 900 aaKnown RBP21.66■■□□□ 1.06
SMPD1-201ENST00000342245 E4F1Q66K89 784 aaPredicted RBP21.66■■□□□ 1.06
SMPD1-201ENST00000342245 CC2D1AQ6P1N0 951 aaPredicted RBP21.66■■□□□ 1.06
SMPD1-201ENST00000342245 DNAI1Q9UI46 699 aa21.66■■□□□ 1.06
SMPD1-201ENST00000342245 ADAM21Q9UKJ8 722 aa21.66■■□□□ 1.06
SMPD1-201ENST00000342245 GIGYF1O75420 1035 aaPredicted RBP21.65■■□□□ 1.06
SMPD1-201ENST00000342245 ARFGAP3Q9NP61 516 aa21.65■■□□□ 1.06
SMPD1-201ENST00000342245 MKRN1Q9UHC7 482 aaKnown RBP21.65■■□□□ 1.06
SMPD1-201ENST00000342245 LEO1Q8WVC0 666 aaPredicted RBP21.65■■□□□ 1.06
SMPD1-201ENST00000342245 CABP2Q9NPB3 220 aa21.65■■□□□ 1.06
SMPD1-201ENST00000342245 PDRG1Q9NUG6 133 aa21.65■■□□□ 1.06
SMPD1-201ENST00000342245 USP16Q9Y5T5 823 aa21.65■■□□□ 1.06
SMPD1-201ENST00000342245 CHD2O14647 1828 aaKnown RBP21.64■■□□□ 1.06
SMPD1-201ENST00000342245 LSG1Q9H089 658 aaKnown RBP21.64■■□□□ 1.05
SMPD1-201ENST00000342245 LMAN1P49257 510 aa21.64■■□□□ 1.05
SMPD1-201ENST00000342245 BICD2Q8TD16 824 aa21.64■■□□□ 1.05
SMPD1-201ENST00000342245 MYCNP04198 464 aaPredicted RBP21.63■■□□□ 1.05
SMPD1-201ENST00000342245 PACS2Q86VP3 889 aa21.63■■□□□ 1.05
SMPD1-201ENST00000342245 NAT10Q9H0A0 1025 aaKnown RBP21.63■■□□□ 1.05
SMPD1-201ENST00000342245 DLG5Q8TDM6 1919 aa21.63■■□□□ 1.05
SMPD1-201ENST00000342245 ANO10Q9NW15 660 aa21.63■■□□□ 1.05
SMPD1-201ENST00000342245 SIGLEC1Q9BZZ2 1709 aa21.62■■□□□ 1.05
SMPD1-201ENST00000342245 NR1I2O75469 434 aa21.62■■□□□ 1.05
SMPD1-201ENST00000342245 TSGA10IPQ3SY00 556 aa21.62■■□□□ 1.05
SMPD1-201ENST00000342245 TSHZ3Q63HK5 1081 aa21.62■■□□□ 1.05
SMPD1-201ENST00000342245 MSL3Q8N5Y2 521 aaKnown RBP21.62■■□□□ 1.05
SMPD1-201ENST00000342245 CYP46A1Q9Y6A2 500 aa21.62■■□□□ 1.05
SMPD1-201ENST00000342245 CD163L1Q9NR16 1453 aa21.62■■□□□ 1.05
SMPD1-201ENST00000342245 SAFB2Q14151 953 aaKnown RBP eCLIP21.62■■□□□ 1.05
SMPD1-201ENST00000342245 KRT24Q2M2I5 525 aa21.62■■□□□ 1.05
SMPD1-201ENST00000342245 LRRN4CLQ8ND94 238 aa21.62■■□□□ 1.05
SMPD1-201ENST00000342245 HOMER1Q86YM7 354 aa21.61■■□□□ 1.05
SMPD1-201ENST00000342245 BANK1Q8NDB2 785 aa21.61■■□□□ 1.05
SMPD1-201ENST00000342245 DRC1Q96MC2 740 aa21.61■■□□□ 1.05
SMPD1-201ENST00000342245 KIF1CO43896 1103 aaKnown RBP21.61■■□□□ 1.05
SMPD1-201ENST00000342245 LARGE1O95461 756 aa21.61■■□□□ 1.05
SMPD1-201ENST00000342245 CPP00450 1065 aa21.61■■□□□ 1.05
SMPD1-201ENST00000342245 GSCP56915 257 aaPredicted RBP21.61■■□□□ 1.05
SMPD1-201ENST00000342245 HDGFL2Q7Z4V5 671 aaPredicted RBP21.61■■□□□ 1.05
SMPD1-201ENST00000342245 ZSWIM6Q9HCJ5 1215 aa21.61■■□□□ 1.05
SMPD1-201ENST00000342245 SASH3O75995 380 aa21.6■■□□□ 1.05
SMPD1-201ENST00000342245 SFPQP23246 707 aaKnown RBP eCLIP21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms