RNA–Protein interactions for RNA: ENST00000333617.8

LSAMP-201, Transcript of limbic system associated membrane protein, humanhuman

TSL 2

Gene LSAMP, Length 1,561 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-201ENST00000333617 UPF2Q9HAU5 1272 aaKnown RBP10.88□□□□□ -0.67
LSAMP-201ENST00000333617 F6X3S4 739 aa10.87□□□□□ -0.67
LSAMP-201ENST00000333617 HOXB7P09629 217 aa10.87□□□□□ -0.67
LSAMP-201ENST00000333617 EIF4A1P60842 406 aaKnown RBP10.87□□□□□ -0.67
LSAMP-201ENST00000333617 FAM98CQ17RN3 349 aaKnown RBP10.87□□□□□ -0.67
LSAMP-201ENST00000333617 RAPGEF4Q8WZA2 1011 aa10.87□□□□□ -0.67
LSAMP-201ENST00000333617 NLRP2Q9NX02 1062 aa10.87□□□□□ -0.67
LSAMP-201ENST00000333617 CPDO75976 1380 aa10.87□□□□□ -0.67
LSAMP-201ENST00000333617 ZNF335Q9H4Z2 1342 aaPredicted RBP10.87□□□□□ -0.67
LSAMP-201ENST00000333617 PRSS12P56730 875 aa10.86□□□□□ -0.67
LSAMP-201ENST00000333617 CEP85Q6P2H3 762 aa10.86□□□□□ -0.67
LSAMP-201ENST00000333617 MEIS3Q99687 375 aa10.86□□□□□ -0.67
LSAMP-201ENST00000333617 DCTPP1Q9H773 170 aa10.86□□□□□ -0.67
LSAMP-201ENST00000333617 TSKSQ9UJT2 592 aa10.86□□□□□ -0.67
LSAMP-201ENST00000333617 C5P01031 1676 aa10.86□□□□□ -0.67
LSAMP-201ENST00000333617 AK9Q5TCS8 1911 aa10.86□□□□□ -0.67
LSAMP-201ENST00000333617 CSB-PGBD3P0DP91 1061 aa10.86□□□□□ -0.67
LSAMP-201ENST00000333617 TATP17735 454 aaPredicted RBP10.86□□□□□ -0.67
LSAMP-201ENST00000333617 SLAIN2Q9P270 581 aa10.86□□□□□ -0.67
LSAMP-201ENST00000333617 DAXXQ9UER7 740 aaPredicted RBP10.86□□□□□ -0.67
LSAMP-201ENST00000333617 PLEKHG2Q9H7P9 1386 aa10.85□□□□□ -0.67
LSAMP-201ENST00000333617 KAT6BQ8WYB5 2073 aa10.85□□□□□ -0.67
LSAMP-201ENST00000333617 SOWAHBA6NEL2 793 aa10.85□□□□□ -0.67
LSAMP-201ENST00000333617 KCNQ3O43525 872 aa10.85□□□□□ -0.67
LSAMP-201ENST00000333617 EIF2S2P20042 333 aaKnown RBP10.85□□□□□ -0.67
LSAMP-201ENST00000333617 CHRNA2Q15822 529 aa10.85□□□□□ -0.67
LSAMP-201ENST00000333617 SPG7Q9UQ90 795 aa10.85□□□□□ -0.67
LSAMP-201ENST00000333617 TUBGCP6Q96RT7 1819 aa10.85□□□□□ -0.67
LSAMP-201ENST00000333617 SOS2Q07890 1332 aaPredicted RBP10.84□□□□□ -0.67
LSAMP-201ENST00000333617 MEGF6O75095 1541 aa10.84□□□□□ -0.67
LSAMP-201ENST00000333617 HMMRO75330 724 aa10.84□□□□□ -0.67
LSAMP-201ENST00000333617 GNAI2P04899 355 aa10.84□□□□□ -0.67
LSAMP-201ENST00000333617 GNAI3P08754 354 aa10.84□□□□□ -0.67
LSAMP-201ENST00000333617 BCAMP50895 628 aa10.84□□□□□ -0.67
LSAMP-201ENST00000333617 BMP2KLQ5H9B9 411 aa10.84□□□□□ -0.67
LSAMP-201ENST00000333617 LAMB4A4D0S4 1761 aa10.83□□□□□ -0.68
LSAMP-201ENST00000333617 Q6ZNB5 142 aa10.83□□□□□ -0.68
LSAMP-201ENST00000333617 TBC1D32Q96NH3 1257 aa10.83□□□□□ -0.68
LSAMP-201ENST00000333617 PHAXQ9H814 394 aaKnown RBP10.83□□□□□ -0.68
LSAMP-201ENST00000333617 AFDNP55196 1824 aaKnown RBP10.82□□□□□ -0.68
LSAMP-201ENST00000333617 CDHR5Q9HBB8 845 aa10.82□□□□□ -0.68
LSAMP-201ENST00000333617 CHPF2Q9P2E5 772 aa10.82□□□□□ -0.68
LSAMP-201ENST00000333617 KDM6AO15550 1401 aaPredicted RBP10.82□□□□□ -0.68
LSAMP-201ENST00000333617 SHANK3Q9BYB0 1731 aa10.82□□□□□ -0.68
LSAMP-201ENST00000333617 HEG1Q9ULI3 1381 aa10.82□□□□□ -0.68
LSAMP-201ENST00000333617 PHKG2P15735 406 aa10.82□□□□□ -0.68
LSAMP-201ENST00000333617 IFNL2Q8IZJ0 200 aa10.82□□□□□ -0.68
LSAMP-201ENST00000333617 MRC1P22897 1456 aa10.81□□□□□ -0.68
LSAMP-201ENST00000333617 GIGYF1O75420 1035 aaPredicted RBP10.81□□□□□ -0.68
LSAMP-201ENST00000333617 RBM27Q9P2N5 1060 aaKnown RBP10.81□□□□□ -0.68
LSAMP-201ENST00000333617 DBF4Q9UBU7 674 aaPredicted RBP10.81□□□□□ -0.68
LSAMP-201ENST00000333617 NBPF26B4DH59 902 aa10.8□□□□□ -0.68
LSAMP-201ENST00000333617 SLC4A3P48751 1232 aa10.8□□□□□ -0.68
LSAMP-201ENST00000333617 MFAP1P55081 439 aaKnown RBP10.8□□□□□ -0.68
LSAMP-201ENST00000333617 BECN1Q14457 450 aa10.8□□□□□ -0.68
LSAMP-201ENST00000333617 NYAP1Q6ZVC0 841 aa10.8□□□□□ -0.68
LSAMP-201ENST00000333617 PLEKHM2Q8IWE5 1019 aa10.8□□□□□ -0.68
LSAMP-201ENST00000333617 LRCH3Q96II8 777 aa10.8□□□□□ -0.68
LSAMP-201ENST00000333617 SRCIN1Q9C0H9 1055 aa10.8□□□□□ -0.68
LSAMP-201ENST00000333617 SLC52A2Q9HAB3 445 aa10.8□□□□□ -0.68
LSAMP-201ENST00000333617 PRDM11Q9NQV5 511 aa10.8□□□□□ -0.68
LSAMP-201ENST00000333617 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.8□□□□□ -0.68
LSAMP-201ENST00000333617 FAM198AQ9UFP1 575 aa10.8□□□□□ -0.68
LSAMP-201ENST00000333617 UBR2Q8IWV8 1755 aa10.8□□□□□ -0.68
LSAMP-201ENST00000333617 HSP90AB1P08238 724 aaKnown RBP10.79□□□□□ -0.68
LSAMP-201ENST00000333617 UBTFL1P0CB47 393 aaPredicted RBP10.79□□□□□ -0.68
LSAMP-201ENST00000333617 MLLT3P42568 568 aaPredicted RBP10.79□□□□□ -0.68
LSAMP-201ENST00000333617 ATP8B2P98198 1209 aa10.79□□□□□ -0.68
LSAMP-201ENST00000333617 IFFO2Q5TF58 517 aa10.79□□□□□ -0.68
LSAMP-201ENST00000333617 DNAAF4Q8WXU2 420 aa10.79□□□□□ -0.68
LSAMP-201ENST00000333617 DCAF5Q96JK2 942 aa10.79□□□□□ -0.68
LSAMP-201ENST00000333617 C22orf23Q9BZE7 217 aa10.79□□□□□ -0.68
LSAMP-201ENST00000333617 USP44Q9H0E7 712 aa10.79□□□□□ -0.68
LSAMP-201ENST00000333617 COL5A2P05997 1499 aaPredicted RBP10.79□□□□□ -0.68
LSAMP-201ENST00000333617 WDR17Q8IZU2 1322 aa10.79□□□□□ -0.68
LSAMP-201ENST00000333617 PI4KAP2A4QPH2 592 aa10.78□□□□□ -0.68
LSAMP-201ENST00000333617 APBB1O00213 710 aa10.78□□□□□ -0.68
LSAMP-201ENST00000333617 ZNF790Q6PG37 636 aa10.78□□□□□ -0.68
LSAMP-201ENST00000333617 PI4KAP1Q8N8J0 262 aa10.78□□□□□ -0.68
LSAMP-201ENST00000333617 NFATC2IPQ8NCF5 419 aa10.78□□□□□ -0.68
LSAMP-201ENST00000333617 HYPKQ9NX55 129 aa10.78□□□□□ -0.68
LSAMP-201ENST00000333617 LRRFIP2Q9Y608 721 aaKnown RBP10.78□□□□□ -0.68
LSAMP-201ENST00000333617 ARFGEF2Q9Y6D5 1785 aa10.78□□□□□ -0.68
LSAMP-201ENST00000333617 ADCY9O60503 1353 aa10.78□□□□□ -0.68
LSAMP-201ENST00000333617 CYP27B1O15528 508 aa10.77□□□□□ -0.68
LSAMP-201ENST00000333617 SMARCA5O60264 1052 aaPredicted RBP10.77□□□□□ -0.68
LSAMP-201ENST00000333617 ANXA1P04083 346 aa10.77□□□□□ -0.68
LSAMP-201ENST00000333617 BEND3Q5T5X7 828 aa10.77□□□□□ -0.68
LSAMP-201ENST00000333617 TTC22Q5TAA0 569 aa10.77□□□□□ -0.68
LSAMP-201ENST00000333617 C16orf71Q8IYS4 520 aaPredicted RBP10.77□□□□□ -0.68
LSAMP-201ENST00000333617 TATDN2Q93075 761 aa10.77□□□□□ -0.68
LSAMP-201ENST00000333617 ITGB4P16144 1822 aa10.77□□□□□ -0.68
LSAMP-201ENST00000333617 PAPPAQ13219 1627 aa10.77□□□□□ -0.68
LSAMP-201ENST00000333617 ROBO1Q9Y6N7 1651 aa10.77□□□□□ -0.69
LSAMP-201ENST00000333617 PRAMEF22A3QJZ6 481 aa10.77□□□□□ -0.69
LSAMP-201ENST00000333617 SMAPO00193 183 aa10.77□□□□□ -0.69
LSAMP-201ENST00000333617 TOM1L2Q6ZVM7 507 aa10.77□□□□□ -0.69
LSAMP-201ENST00000333617 BCL11AQ9H165 835 aa10.77□□□□□ -0.69
LSAMP-201ENST00000333617 DDX21Q9NR30 783 aaKnown RBP eCLIP10.77□□□□□ -0.69
LSAMP-201ENST00000333617 WBP1LQ9NX94 342 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms