RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.71□□□□□ -1.01
LIMCH1-201ENST00000313860 KIAA2013Q8IYS2 634 aa8.71□□□□□ -1.01
LIMCH1-201ENST00000313860 CCDC155Q8N6L0 562 aa8.71□□□□□ -1.01
LIMCH1-201ENST00000313860 ARHGEF2Q92974 986 aaKnown RBP8.71□□□□□ -1.01
LIMCH1-201ENST00000313860 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.71□□□□□ -1.01
LIMCH1-201ENST00000313860 TLK1Q9UKI8 766 aa8.71□□□□□ -1.01
LIMCH1-201ENST00000313860 PPP2R5AQ15172 486 aa8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 TAF7Q15545 349 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 TLK2Q86UE8 772 aa8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 PALM2Q8IXS6 379 aa8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 SF3B2Q13435 895 aaKnown RBP8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 SH3BP5LQ7L8J4 393 aa8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 VPS52Q8N1B4 723 aa8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 PIBF1Q8WXW3 757 aa8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 ZSWIM4Q9H7M6 989 aa8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 HSPA1LP34931 641 aa8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 CCDC82Q8N4S0 544 aa8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 PDZD8Q8NEN9 1154 aa8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 CCT6BQ92526 530 aa8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 SPAG5Q96R06 1193 aa8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 MYCBPQ99417 103 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 IRAK4Q9NWZ3 460 aa8.71□□□□□ -1.02
LIMCH1-201ENST00000313860 ZEB2O60315 1214 aa8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 SNX16P57768 344 aa8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 HDDC2Q7Z4H3 204 aa8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 GOLGA6AQ9NYA3 693 aa8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 CTAGE5O15320 804 aa8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 STIM1Q13586 685 aa8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 NBPF20Q3BBV1 942 aa8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 VPS37DQ86XT2 251 aa8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 VCX3AQ9NNX9 186 aa8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 RNF216Q9NWF9 866 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 GTPBP10A4D1E9 387 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 PRDM1O75626 825 aa8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 THEGQ9P2T0 379 aa8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 CAPN2P17655 700 aa8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 PLIN5Q00G26 463 aa8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 TMCO5AQ8N6Q1 288 aa8.7□□□□□ -1.02
LIMCH1-201ENST00000313860 TRAK2O60296 914 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 ATP2A2P16615 1042 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 DEUP1Q05D60 604 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 MAP3K21Q5TCX8 1036 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 ENAHQ8N8S7 591 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 TRIML1Q8N9V2 468 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 FERMT2Q96AC1 680 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 GOLGA6CA6NDK9 693 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 GOLGA6DP0CG33 693 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 PTPN14Q15678 1187 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 ZKSCAN2Q63HK3 967 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 CCDC102BQ68D86 513 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 ARHGAP25P42331 645 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 GLE1Q53GS7 698 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 PABPN1Q86U42 306 aaKnown RBP eCLIP8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 ATP6V0A1Q93050 837 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 CEP19Q96LK0 163 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 PPARDQ03181 441 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 ACRBPQ8NEB7 543 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 POGKQ9P215 609 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 IQANK1A0A1B0GTG1 560 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 XBP1P17861 261 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 CPLX4Q7Z7G2 160 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 KCNK9Q9NPC2 374 aa8.69□□□□□ -1.02
LIMCH1-201ENST00000313860 S100BP04271 92 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 ZNF131P52739 623 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 C11orf88Q6PI97 169 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 ZNF397Q8NF99 534 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 TEKT1Q969V4 418 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 SPZ1Q9BXG8 430 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 TRIM7Q9C029 511 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 ZMYND8Q9ULU4 1186 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 INTS8Q75QN2 995 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 LZICQ8WZA0 190 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 PRDM5Q9NQX1 630 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 TRMT1Q9NXH9 659 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 SCOCQ9UIL1 159 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 COPG1Q9Y678 874 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 TNNC2P02585 160 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 SF3A3Q12874 501 aaKnown RBP eCLIP8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 HELBQ8NG08 1087 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 KRT14P02533 472 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 EEF2P13639 858 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 PAFAH1B1P43034 410 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 NLRP5P59047 1200 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 TTC19Q6DKK2 380 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 NFRKBQ6P4R8 1299 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 KRBA2Q6ZNG9 492 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 POTEDQ86YR6 584 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 GEMIN8Q9NWZ8 242 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 hCG_2014768A0A024R1R8 64 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 RASIP1Q5U651 963 aa8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 LSM14BQ9BX40 385 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-201ENST00000313860 FIBPO43427 364 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 SKIP12755 728 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 HIF1AQ16665 826 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 RCAN3Q9UKA8 241 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 EBAG9O00559 213 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 GRSF1Q12849 480 aaKnown RBP eCLIP8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 CEP85Q6P2H3 762 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 TEX9Q8N6V9 391 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 DACH1Q9UI36 760 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms