RNA–Protein interactions for RNA: ENST00000308987.5

CKS1B-201, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS1B, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-201ENST00000308987 FOXD4L3Q6VB84 417 aaPredicted RBP7.51□□□□□ -1.21
CKS1B-201ENST00000308987 RNF135Q8IUD6 432 aa7.51□□□□□ -1.21
CKS1B-201ENST00000308987 PGBD3Q8N328 593 aa7.51□□□□□ -1.21
CKS1B-201ENST00000308987 ZNF777Q9ULD5 760 aaPredicted RBP7.51□□□□□ -1.21
CKS1B-201ENST00000308987 PCDHB11Q9Y5F2 797 aa7.51□□□□□ -1.21
CKS1B-201ENST00000308987 DNMT1P26358 1616 aaKnown RBP7.51□□□□□ -1.21
CKS1B-201ENST00000308987 KIAA1107Q9UPP5 1409 aa7.51□□□□□ -1.21
CKS1B-201ENST00000308987 SPAG9O60271 1321 aaKnown RBP7.51□□□□□ -1.21
CKS1B-201ENST00000308987 ZNF644Q9H582 1327 aaPredicted RBP7.51□□□□□ -1.21
CKS1B-201ENST00000308987 PLA2R1Q13018 1463 aa7.5□□□□□ -1.21
CKS1B-201ENST00000308987 NEURL1BA8MQ27 555 aa7.5□□□□□ -1.21
CKS1B-201ENST00000308987 FBXO45P0C2W1 286 aa7.5□□□□□ -1.21
CKS1B-201ENST00000308987 MSX1P28360 303 aa7.5□□□□□ -1.21
CKS1B-201ENST00000308987 EFHC2Q5JST6 749 aa7.5□□□□□ -1.21
CKS1B-201ENST00000308987 ZSCAN10Q96SZ4 725 aaPredicted RBP7.5□□□□□ -1.21
CKS1B-201ENST00000308987 ESF1Q9H501 851 aaKnown RBP7.5□□□□□ -1.21
CKS1B-201ENST00000308987 STRCP1A6NGW2 1772 aa7.5□□□□□ -1.21
CKS1B-201ENST00000308987 MBD5Q9P267 1494 aa7.49□□□□□ -1.21
CKS1B-201ENST00000308987 ALKQ9UM73 1620 aa7.49□□□□□ -1.21
CKS1B-201ENST00000308987 SCO2A0A1W2PP80 73 aa7.49□□□□□ -1.21
CKS1B-201ENST00000308987 GNRH1P01148 92 aa7.49□□□□□ -1.21
CKS1B-201ENST00000308987 ARAFP10398 606 aa7.49□□□□□ -1.21
CKS1B-201ENST00000308987 C4orf17Q53FE4 359 aa7.49□□□□□ -1.21
CKS1B-201ENST00000308987 HRH3Q9Y5N1 445 aa7.49□□□□□ -1.21
CKS1B-201ENST00000308987 RSPO4Q2I0M5 234 aaPredicted RBP7.48□□□□□ -1.21
CKS1B-201ENST00000308987 GNASQ5JWF2 1037 aa7.48□□□□□ -1.21
CKS1B-201ENST00000308987 CHSY3Q70JA7 882 aa7.48□□□□□ -1.21
CKS1B-201ENST00000308987 UBAP1LF5GYI3 381 aa7.47□□□□□ -1.21
CKS1B-201ENST00000308987 TMEM214Q6NUQ4 689 aaKnown RBP7.47□□□□□ -1.21
CKS1B-201ENST00000308987 GGT6Q6P531 493 aa7.47□□□□□ -1.21
CKS1B-201ENST00000308987 XAGE2Q96GT9 111 aa7.47□□□□□ -1.21
CKS1B-201ENST00000308987 FHDC1Q9C0D6 1143 aaPredicted RBP7.47□□□□□ -1.21
CKS1B-201ENST00000308987 CFDP1Q9UEE9 299 aaPredicted RBP7.47□□□□□ -1.21
CKS1B-201ENST00000308987 A2ML1A8K2U0 1454 aa7.47□□□□□ -1.21
CKS1B-201ENST00000308987 PLEKHH2Q8IVE3 1493 aa7.47□□□□□ -1.21
CKS1B-201ENST00000308987 VWDEQ8N2E2 1590 aa7.46□□□□□ -1.21
CKS1B-201ENST00000308987 NKAPLQ5M9Q1 402 aa7.46□□□□□ -1.22
CKS1B-201ENST00000308987 TRIM11Q96F44 468 aa7.46□□□□□ -1.22
CKS1B-201ENST00000308987 KLF15Q9UIH9 416 aa7.46□□□□□ -1.22
CKS1B-201ENST00000308987 MED1Q15648 1581 aaPredicted RBP7.46□□□□□ -1.22
CKS1B-201ENST00000308987 CCNB3Q8WWL7 1395 aa7.46□□□□□ -1.22
CKS1B-201ENST00000308987 GTF2E1P29083 439 aaPredicted RBP7.45□□□□□ -1.22
CKS1B-201ENST00000308987 RFC5P40937 340 aa7.45□□□□□ -1.22
CKS1B-201ENST00000308987 MCCD1P59942 119 aaPredicted RBP7.45□□□□□ -1.22
CKS1B-201ENST00000308987 PLVAPQ9BX97 442 aa7.45□□□□□ -1.22
CKS1B-201ENST00000308987 XIRP1Q702N8 1843 aaKnown RBP7.45□□□□□ -1.22
CKS1B-201ENST00000308987 EHBP1L1Q8N3D4 1523 aa7.44□□□□□ -1.22
CKS1B-201ENST00000308987 ARTNQ5T4W7 220 aa7.44□□□□□ -1.22
CKS1B-201ENST00000308987 KRTAP9-9Q9BYP9 154 aa7.44□□□□□ -1.22
CKS1B-201ENST00000308987 KRTAP9-4Q9BYQ2 154 aa7.44□□□□□ -1.22
CKS1B-201ENST00000308987 FAM117AQ9C073 453 aa7.44□□□□□ -1.22
CKS1B-201ENST00000308987 ZCCHC2Q9C0B9 1178 aaKnown RBP7.44□□□□□ -1.22
CKS1B-201ENST00000308987 CRISPLD1Q9H336 500 aa7.44□□□□□ -1.22
CKS1B-201ENST00000308987 ZFP64Q9NPA5 681 aa7.44□□□□□ -1.22
CKS1B-201ENST00000308987 MTUS2Q5JR59 1369 aa7.44□□□□□ -1.22
CKS1B-201ENST00000308987 DHX29Q7Z478 1369 aaKnown RBP7.44□□□□□ -1.22
CKS1B-201ENST00000308987 RTEL1-TNFRSF6BF6WH68 1400 aa7.44□□□□□ -1.22
CKS1B-201ENST00000308987 PZPP20742 1482 aa7.43□□□□□ -1.22
CKS1B-201ENST00000308987 SHANK2Q9UPX8 1470 aa7.43□□□□□ -1.22
CKS1B-201ENST00000308987 SPATA31C1P0DKV0 1188 aa7.43□□□□□ -1.22
CKS1B-201ENST00000308987 HSPA1LP34931 641 aa7.43□□□□□ -1.22
CKS1B-201ENST00000308987 GPBP1L1Q9HC44 474 aaPredicted RBP7.43□□□□□ -1.22
CKS1B-201ENST00000308987 PCDHGC4Q9Y5F7 938 aa7.43□□□□□ -1.22
CKS1B-201ENST00000308987 ZC3H13Q5T200 1668 aaKnown RBP7.43□□□□□ -1.22
CKS1B-201ENST00000308987 CEP152O94986 1710 aa7.43□□□□□ -1.22
CKS1B-201ENST00000308987 TNRQ92752 1358 aa7.43□□□□□ -1.22
CKS1B-201ENST00000308987 CEP162Q5TB80 1403 aa7.43□□□□□ -1.22
CKS1B-201ENST00000308987 KDM5DQ9BY66 1539 aa7.42□□□□□ -1.22
CKS1B-201ENST00000308987 DEPDC5O75140 1603 aa7.42□□□□□ -1.22
CKS1B-201ENST00000308987 MROH1Q8NDA8 1641 aa7.42□□□□□ -1.22
CKS1B-201ENST00000308987 RNF17Q9BXT8 1623 aaKnown RBP7.42□□□□□ -1.22
CKS1B-201ENST00000308987 IQGAP1P46940 1657 aa7.42□□□□□ -1.22
CKS1B-201ENST00000308987 ADH6P28332 368 aa7.42□□□□□ -1.22
CKS1B-201ENST00000308987 FCHSD1Q86WN1 690 aa7.42□□□□□ -1.22
CKS1B-201ENST00000308987 TPSG1Q9NRR2 321 aa7.42□□□□□ -1.22
CKS1B-201ENST00000308987 DNAAF2Q9NVR5 837 aaKnown RBP7.42□□□□□ -1.22
CKS1B-201ENST00000308987 CAMSAP2Q08AD1 1489 aa7.42□□□□□ -1.22
CKS1B-201ENST00000308987 NCOA2Q15596 1464 aa7.42□□□□□ -1.22
CKS1B-201ENST00000308987 KIF3BO15066 747 aa7.41□□□□□ -1.22
CKS1B-201ENST00000308987 FIGNL1Q6PIW4 674 aa7.41□□□□□ -1.22
CKS1B-201ENST00000308987 PPARGC1BQ86YN6 1023 aaKnown RBP7.41□□□□□ -1.22
CKS1B-201ENST00000308987 DDRGK1Q96HY6 314 aa7.41□□□□□ -1.22
CKS1B-201ENST00000308987 GJD4Q96KN9 370 aaPredicted RBP7.41□□□□□ -1.22
CKS1B-201ENST00000308987 CDCA7Q9BWT1 371 aaPredicted RBP7.41□□□□□ -1.22
CKS1B-201ENST00000308987 KDM4CQ9H3R0 1056 aa7.41□□□□□ -1.22
CKS1B-201ENST00000308987 HCN2Q9UL51 889 aa7.41□□□□□ -1.22
CKS1B-201ENST00000308987 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.41□□□□□ -1.22
CKS1B-201ENST00000308987 MED14O60244 1454 aa7.41□□□□□ -1.22
CKS1B-201ENST00000308987 CCDC141Q6ZP82 1450 aa7.41□□□□□ -1.22
CKS1B-201ENST00000308987 CPS1P31327 1500 aa7.41□□□□□ -1.22
CKS1B-201ENST00000308987 ARHGEF5Q12774 1597 aa7.41□□□□□ -1.22
CKS1B-201ENST00000308987 UBR1Q8IWV7 1749 aa7.41□□□□□ -1.22
CKS1B-201ENST00000308987 DYRK3O43781 588 aa7.4□□□□□ -1.22
CKS1B-201ENST00000308987 PIP4K2BP78356 416 aa7.4□□□□□ -1.22
CKS1B-201ENST00000308987 NR1H3Q13133 447 aa7.4□□□□□ -1.22
CKS1B-201ENST00000308987 RHBDD1Q8TEB9 315 aa7.4□□□□□ -1.22
CKS1B-201ENST00000308987 MIA2Q96PC5 1412 aa7.4□□□□□ -1.22
CKS1B-201ENST00000308987 FAM135AQ9P2D6 1515 aa7.4□□□□□ -1.22
CKS1B-201ENST00000308987 UGGT1Q9NYU2 1555 aa7.4□□□□□ -1.22
CKS1B-201ENST00000308987 ABCC3O15438 1527 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms