RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 N4BP2Q86UW6 1770 aaPredicted RBP28.38■■■□□ 2.13
HOXD4-201ENST00000306324 IGKV5-2P06315 115 aa28.38■■■□□ 2.13
HOXD4-201ENST00000306324 TRIM28Q13263 835 aaKnown RBP28.38■■■□□ 2.13
HOXD4-201ENST00000306324 CWF19L2Q2TBE0 894 aaKnown RBP28.38■■■□□ 2.13
HOXD4-201ENST00000306324 TRMT112Q9UI30 125 aaKnown RBP28.38■■■□□ 2.13
HOXD4-201ENST00000306324 CCDC191Q8NCU4 936 aa28.37■■■□□ 2.13
HOXD4-201ENST00000306324 CWC25Q9NXE8 425 aaPredicted RBP28.37■■■□□ 2.13
HOXD4-201ENST00000306324 ERFEQ4G0M1 354 aa28.36■■■□□ 2.13
HOXD4-201ENST00000306324 SYT17Q9BSW7 474 aa28.36■■■□□ 2.13
HOXD4-201ENST00000306324 NEURL1BA8MQ27 555 aa28.35■■■□□ 2.13
HOXD4-201ENST00000306324 IPO8O15397 1037 aaKnown RBP28.35■■■□□ 2.13
HOXD4-201ENST00000306324 LINS1Q8NG48 757 aa28.35■■■□□ 2.13
HOXD4-201ENST00000306324 API5Q9BZZ5 524 aaKnown RBP28.35■■■□□ 2.13
HOXD4-201ENST00000306324 RTL5Q5HYW3 569 aaPredicted RBP28.34■■■□□ 2.13
HOXD4-201ENST00000306324 BEND3Q5T5X7 828 aa28.34■■■□□ 2.13
HOXD4-201ENST00000306324 KIAA1551Q9HCM1 1747 aa28.34■■■□□ 2.13
HOXD4-201ENST00000306324 NLGN2Q8NFZ4 835 aa28.34■■■□□ 2.13
HOXD4-201ENST00000306324 ARHGAP45Q92619 1136 aa28.34■■■□□ 2.13
HOXD4-201ENST00000306324 FAM89AQ96GI7 184 aa28.34■■■□□ 2.13
HOXD4-201ENST00000306324 ABCC12Q96J65 1359 aa28.33■■■□□ 2.13
HOXD4-201ENST00000306324 SH3TC1Q8TE82 1336 aa28.33■■■□□ 2.13
HOXD4-201ENST00000306324 BRIP1Q9BX63 1249 aa28.33■■■□□ 2.13
HOXD4-201ENST00000306324 RNF123Q5XPI4 1314 aa28.32■■■□□ 2.12
HOXD4-201ENST00000306324 TNRC6CQ9HCJ0 1690 aaKnown RBP28.32■■■□□ 2.12
HOXD4-201ENST00000306324 SYNE4Q8N205 404 aa28.32■■■□□ 2.12
HOXD4-201ENST00000306324 SRCIN1Q9C0H9 1055 aa28.32■■■□□ 2.12
HOXD4-201ENST00000306324 DDX60Q8IY21 1712 aaKnown RBP28.32■■■□□ 2.12
HOXD4-201ENST00000306324 GOLGB1Q14789 3259 aaKnown RBP28.32■■■□□ 2.12
HOXD4-201ENST00000306324 PXDNLA1KZ92 1463 aa28.31■■■□□ 2.12
HOXD4-201ENST00000306324 ZKSCAN2Q63HK3 967 aa28.31■■■□□ 2.12
HOXD4-201ENST00000306324 ATF7IPQ6VMQ6 1270 aa28.31■■■□□ 2.12
HOXD4-201ENST00000306324 COL11A2P13942 1736 aaPredicted RBP28.3■■■□□ 2.12
HOXD4-201ENST00000306324 LAMB2P55268 1798 aa28.3■■■□□ 2.12
HOXD4-201ENST00000306324 PDE6BP35913 854 aa28.3■■■□□ 2.12
HOXD4-201ENST00000306324 GCKRQ14397 625 aa28.3■■■□□ 2.12
HOXD4-201ENST00000306324 ZBTB38Q8NAP3 1195 aaPredicted RBP28.3■■■□□ 2.12
HOXD4-201ENST00000306324 JARID2Q92833 1246 aaPredicted RBP28.3■■■□□ 2.12
HOXD4-201ENST00000306324 TRIM27P14373 513 aa28.29■■■□□ 2.12
HOXD4-201ENST00000306324 TGFB2P61812 414 aa28.29■■■□□ 2.12
HOXD4-201ENST00000306324 A0A0G2JLW4 131 aa28.28■■■□□ 2.12
HOXD4-201ENST00000306324 PCCAP05165 728 aaPredicted RBP28.28■■■□□ 2.12
HOXD4-201ENST00000306324 TNNQ9UQP3 1299 aa28.28■■■□□ 2.12
HOXD4-201ENST00000306324 DLEC1Q9Y238 1755 aa28.28■■■□□ 2.12
HOXD4-201ENST00000306324 ALDH1L1O75891 902 aa28.27■■■□□ 2.12
HOXD4-201ENST00000306324 HCLS1P14317 486 aaPredicted RBP28.27■■■□□ 2.12
HOXD4-201ENST00000306324 CHRNA5P30532 468 aa28.27■■■□□ 2.12
HOXD4-201ENST00000306324 CLUAP1Q96AJ1 413 aa28.27■■■□□ 2.12
HOXD4-201ENST00000306324 BRCA1P38398 1863 aaKnown RBP28.27■■■□□ 2.12
HOXD4-201ENST00000306324 CACNA1SQ13698 1873 aa28.27■■■□□ 2.12
HOXD4-201ENST00000306324 MYH3P11055 1940 aa28.27■■■□□ 2.12
HOXD4-201ENST00000306324 DPEP1P16444 411 aa28.27■■■□□ 2.12
HOXD4-201ENST00000306324 C2CD5Q86YS7 1000 aa28.27■■■□□ 2.12
HOXD4-201ENST00000306324 H0YIN7 160 aa28.26■■■□□ 2.11
HOXD4-201ENST00000306324 IRS4O14654 1257 aaPredicted RBP28.26■■■□□ 2.11
HOXD4-201ENST00000306324 SLC10A5Q5PT55 438 aa28.26■■■□□ 2.11
HOXD4-201ENST00000306324 UBE3BQ7Z3V4 1068 aa28.26■■■□□ 2.11
HOXD4-201ENST00000306324 RIC1Q4ADV7 1423 aa28.25■■■□□ 2.11
HOXD4-201ENST00000306324 CCT4P50991 539 aaKnown RBP28.25■■■□□ 2.11
HOXD4-201ENST00000306324 NLRP3Q96P20 1036 aa28.25■■■□□ 2.11
HOXD4-201ENST00000306324 ABCC4O15439 1325 aa28.25■■■□□ 2.11
HOXD4-201ENST00000306324 C9orf78Q9NZ63 289 aaPredicted RBP28.24■■■□□ 2.11
HOXD4-201ENST00000306324 WWC3Q9ULE0 1092 aa28.24■■■□□ 2.11
HOXD4-201ENST00000306324 H7C1W4 665 aa28.23■■■□□ 2.11
HOXD4-201ENST00000306324 PDZRN3Q9UPQ7 1066 aa28.23■■■□□ 2.11
HOXD4-201ENST00000306324 C3orf67Q6ZVT6 689 aa28.22■■■□□ 2.11
HOXD4-201ENST00000306324 FTSJ3Q8IY81 847 aaKnown RBP28.22■■■□□ 2.11
HOXD4-201ENST00000306324 GRM8O00222 908 aa28.21■■■□□ 2.11
HOXD4-201ENST00000306324 PLIN1O60240 522 aa28.21■■■□□ 2.11
HOXD4-201ENST00000306324 ZNF622Q969S3 477 aaKnown RBP eCLIP28.21■■■□□ 2.11
HOXD4-201ENST00000306324 CDHR2Q9BYE9 1310 aa28.21■■■□□ 2.11
HOXD4-201ENST00000306324 KLRG2A4D1S0 409 aaPredicted RBP28.21■■■□□ 2.11
HOXD4-201ENST00000306324 SRGNP10124 158 aa28.21■■■□□ 2.11
HOXD4-201ENST00000306324 HSP90B1P14625 803 aaKnown RBP28.21■■■□□ 2.11
HOXD4-201ENST00000306324 KCNA3P22001 575 aa28.21■■■□□ 2.11
HOXD4-201ENST00000306324 DZIP1LQ8IYY4 767 aaKnown RBP28.21■■■□□ 2.11
HOXD4-201ENST00000306324 TAF1P21675 1872 aa28.19■■■□□ 2.1
HOXD4-201ENST00000306324 INTS3Q68E01 1043 aaKnown RBP28.19■■■□□ 2.1
HOXD4-201ENST00000306324 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.19■■■□□ 2.1
HOXD4-201ENST00000306324 RPGRQ92834 1020 aaKnown RBP28.19■■■□□ 2.1
HOXD4-201ENST00000306324 MASTLQ96GX5 879 aa28.19■■■□□ 2.1
HOXD4-201ENST00000306324 PIM2Q9P1W9 311 aa28.19■■■□□ 2.1
HOXD4-201ENST00000306324 PDE8AO60658 829 aa28.18■■■□□ 2.1
HOXD4-201ENST00000306324 CASP7P55210 303 aa28.18■■■□□ 2.1
HOXD4-201ENST00000306324 CRY2Q49AN0 593 aa28.18■■■□□ 2.1
HOXD4-201ENST00000306324 PELP1Q8IZL8 1130 aaKnown RBP28.18■■■□□ 2.1
HOXD4-201ENST00000306324 NBPF7P0C2Y1 421 aaPredicted RBP28.17■■■□□ 2.1
HOXD4-201ENST00000306324 NPR1P16066 1061 aa28.17■■■□□ 2.1
HOXD4-201ENST00000306324 TMEM57Q8N5G2 664 aa28.17■■■□□ 2.1
HOXD4-201ENST00000306324 RLBP1P12271 317 aa28.16■■■□□ 2.1
HOXD4-201ENST00000306324 STYK1Q6J9G0 422 aa28.15■■■□□ 2.1
HOXD4-201ENST00000306324 USP44Q9H0E7 712 aa28.15■■■□□ 2.1
HOXD4-201ENST00000306324 SLX4Q8IY92 1834 aa28.15■■■□□ 2.1
HOXD4-201ENST00000306324 MS4A1P11836 297 aa28.15■■■□□ 2.1
HOXD4-201ENST00000306324 PANK1Q8TE04 598 aa28.15■■■□□ 2.1
HOXD4-201ENST00000306324 TTLL6Q8N841 843 aa28.14■■■□□ 2.09
HOXD4-201ENST00000306324 CCDC85AQ96PX6 553 aaPredicted RBP28.14■■■□□ 2.09
HOXD4-201ENST00000306324 BCS1LQ9Y276 419 aa28.14■■■□□ 2.09
HOXD4-201ENST00000306324 ARFGEF1Q9Y6D6 1849 aa28.14■■■□□ 2.09
HOXD4-201ENST00000306324 UTYO14607 1347 aa28.13■■■□□ 2.09
HOXD4-201ENST00000306324 CTSWP56202 376 aa28.13■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms