RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 VIRMAQ69YN4 1812 aaKnown RBP8.57□□□□□ -1.04
DEPDC4-201ENST00000299185 PCDH11XQ9BZA7 1347 aa8.56□□□□□ -1.04
DEPDC4-201ENST00000299185 PCDH11YQ9BZA8 1340 aa8.56□□□□□ -1.04
DEPDC4-201ENST00000299185 ADAMTS7Q9UKP4 1686 aa8.56□□□□□ -1.04
DEPDC4-201ENST00000299185 RBM6P78332 1123 aaKnown RBP8.56□□□□□ -1.04
DEPDC4-201ENST00000299185 DDB1Q16531 1140 aa8.56□□□□□ -1.04
DEPDC4-201ENST00000299185 PLEKHO1Q53GL0 409 aaPredicted RBP8.56□□□□□ -1.04
DEPDC4-201ENST00000299185 BLOC1S3Q6QNY0 202 aa8.56□□□□□ -1.04
DEPDC4-201ENST00000299185 NPDC1Q9NQX5 325 aaPredicted RBP8.56□□□□□ -1.04
DEPDC4-201ENST00000299185 MRC1P22897 1456 aa8.56□□□□□ -1.04
DEPDC4-201ENST00000299185 RIPK4P57078 832 aa8.55□□□□□ -1.04
DEPDC4-201ENST00000299185 LGR6Q9HBX8 967 aa8.55□□□□□ -1.04
DEPDC4-201ENST00000299185 SCN11AQ9UI33 1791 aa8.55□□□□□ -1.04
DEPDC4-201ENST00000299185 NHSQ6T4R5 1651 aa8.54□□□□□ -1.04
DEPDC4-201ENST00000299185 PPEF1O14829 653 aaPredicted RBP8.54□□□□□ -1.04
DEPDC4-201ENST00000299185 RNMTO43148 476 aaKnown RBP8.54□□□□□ -1.04
DEPDC4-201ENST00000299185 GDF9O60383 454 aa8.54□□□□□ -1.04
DEPDC4-201ENST00000299185 GAS2L2Q8NHY3 880 aa8.54□□□□□ -1.04
DEPDC4-201ENST00000299185 SPG7Q9UQ90 795 aa8.54□□□□□ -1.04
DEPDC4-201ENST00000299185 THRAP3Q9Y2W1 955 aaKnown RBP8.54□□□□□ -1.04
DEPDC4-201ENST00000299185 SIPA1L3O60292 1781 aaPredicted RBP8.53□□□□□ -1.04
DEPDC4-201ENST00000299185 KCNQ3O43525 872 aa8.53□□□□□ -1.04
DEPDC4-201ENST00000299185 KCNQ2O43526 872 aa8.53□□□□□ -1.04
DEPDC4-201ENST00000299185 KMT5BQ4FZB7 885 aa8.53□□□□□ -1.04
DEPDC4-201ENST00000299185 C1orf141Q5JVX7 400 aa8.53□□□□□ -1.04
DEPDC4-201ENST00000299185 LIAT1Q6ZQX7 453 aa8.53□□□□□ -1.04
DEPDC4-201ENST00000299185 IL17REQ8NFR9 667 aa8.53□□□□□ -1.04
DEPDC4-201ENST00000299185 MIS18AQ9NYP9 233 aa8.53□□□□□ -1.04
DEPDC4-201ENST00000299185 PAPPAQ13219 1627 aa8.53□□□□□ -1.04
DEPDC4-201ENST00000299185 ITGB4P16144 1822 aa8.52□□□□□ -1.04
DEPDC4-201ENST00000299185 TNS1Q9HBL0 1735 aaKnown RBP8.52□□□□□ -1.05
DEPDC4-201ENST00000299185 GNAT3A8MTJ3 354 aa8.52□□□□□ -1.05
DEPDC4-201ENST00000299185 EXOC5O00471 708 aa8.52□□□□□ -1.05
DEPDC4-201ENST00000299185 NEFMP07197 916 aa8.52□□□□□ -1.05
DEPDC4-201ENST00000299185 KRT24Q2M2I5 525 aa8.52□□□□□ -1.05
DEPDC4-201ENST00000299185 AMOTQ4VCS5 1084 aa8.52□□□□□ -1.05
DEPDC4-201ENST00000299185 AKAP4Q5JQC9 854 aa8.52□□□□□ -1.05
DEPDC4-201ENST00000299185 LCE2AQ5TA79 106 aaPredicted RBP8.52□□□□□ -1.05
DEPDC4-201ENST00000299185 KRT27Q7Z3Y8 459 aa8.52□□□□□ -1.05
DEPDC4-201ENST00000299185 IFNL2Q8IZJ0 200 aa8.52□□□□□ -1.05
DEPDC4-201ENST00000299185 TSR2Q969E8 191 aaKnown RBP8.52□□□□□ -1.05
DEPDC4-201ENST00000299185 SYTL4Q96C24 671 aaPredicted RBP8.52□□□□□ -1.05
DEPDC4-201ENST00000299185 WDR70Q9NW82 654 aa8.52□□□□□ -1.05
DEPDC4-201ENST00000299185 LAS1LQ9Y4W2 734 aaKnown RBP8.52□□□□□ -1.05
DEPDC4-201ENST00000299185 ZNF521Q96K83 1311 aa8.52□□□□□ -1.05
DEPDC4-201ENST00000299185 CEMIPQ8WUJ3 1361 aa8.51□□□□□ -1.05
DEPDC4-201ENST00000299185 KDM3BQ7LBC6 1761 aa8.51□□□□□ -1.05
DEPDC4-201ENST00000299185 C5P01031 1676 aa8.51□□□□□ -1.05
DEPDC4-201ENST00000299185 TNFRSF10AO00220 468 aa8.51□□□□□ -1.05
DEPDC4-201ENST00000299185 ACTN4O43707 911 aaKnown RBP8.51□□□□□ -1.05
DEPDC4-201ENST00000299185 TLL1O43897 1013 aa8.51□□□□□ -1.05
DEPDC4-201ENST00000299185 S1PR4O95977 384 aa8.51□□□□□ -1.05
DEPDC4-201ENST00000299185 PLCB2Q00722 1185 aa8.51□□□□□ -1.05
DEPDC4-201ENST00000299185 PDE3BQ13370 1112 aa8.51□□□□□ -1.05
DEPDC4-201ENST00000299185 SLC39A6Q13433 755 aa8.51□□□□□ -1.05
DEPDC4-201ENST00000299185 WWC1Q8IX03 1113 aa8.51□□□□□ -1.05
DEPDC4-201ENST00000299185 CDCA7Q9BWT1 371 aaPredicted RBP8.51□□□□□ -1.05
DEPDC4-201ENST00000299185 AAASQ9NRG9 546 aa8.51□□□□□ -1.05
DEPDC4-201ENST00000299185 BTAF1O14981 1849 aa8.51□□□□□ -1.05
DEPDC4-201ENST00000299185 SBF2Q86WG5 1849 aa8.51□□□□□ -1.05
DEPDC4-201ENST00000299185 KCPQ6ZWJ8 1503 aa8.5□□□□□ -1.05
DEPDC4-201ENST00000299185 ZBED9Q6R2W3 1325 aa8.5□□□□□ -1.05
DEPDC4-201ENST00000299185 PLEKHG2Q9H7P9 1386 aa8.49□□□□□ -1.05
DEPDC4-201ENST00000299185 TRIM37O94972 964 aa8.49□□□□□ -1.05
DEPDC4-201ENST00000299185 ADH1BP00325 375 aa8.49□□□□□ -1.05
DEPDC4-201ENST00000299185 YY1P25490 414 aa8.49□□□□□ -1.05
DEPDC4-201ENST00000299185 DNAJB2P25686 324 aa8.49□□□□□ -1.05
DEPDC4-201ENST00000299185 KCNQ4P56696 695 aa8.49□□□□□ -1.05
DEPDC4-201ENST00000299185 CCDC125Q86Z20 511 aa8.49□□□□□ -1.05
DEPDC4-201ENST00000299185 RTF1Q92541 710 aaKnown RBP8.49□□□□□ -1.05
DEPDC4-201ENST00000299185 LRP5O75197 1615 aa8.49□□□□□ -1.05
DEPDC4-201ENST00000299185 FANCIQ9NVI1 1328 aa8.49□□□□□ -1.05
DEPDC4-201ENST00000299185 TJP1Q07157 1748 aa8.49□□□□□ -1.05
DEPDC4-201ENST00000299185 BCL9O00512 1426 aa8.48□□□□□ -1.05
DEPDC4-201ENST00000299185 PRAMEF22A3QJZ6 481 aa8.48□□□□□ -1.05
DEPDC4-201ENST00000299185 NR1I2O75469 434 aa8.48□□□□□ -1.05
DEPDC4-201ENST00000299185 CABP4P57796 275 aa8.48□□□□□ -1.05
DEPDC4-201ENST00000299185 CRIPAKQ8N1N5 446 aa8.48□□□□□ -1.05
DEPDC4-201ENST00000299185 PIGBQ92521 554 aa8.48□□□□□ -1.05
DEPDC4-201ENST00000299185 DCAF5Q96JK2 942 aa8.48□□□□□ -1.05
DEPDC4-201ENST00000299185 PNNQ9H307 717 aaKnown RBP8.48□□□□□ -1.05
DEPDC4-201ENST00000299185 SLC52A2Q9HAB3 445 aa8.48□□□□□ -1.05
DEPDC4-201ENST00000299185 MBIPQ9NS73 344 aa8.48□□□□□ -1.05
DEPDC4-201ENST00000299185 STK17AQ9UEE5 414 aa8.48□□□□□ -1.05
DEPDC4-201ENST00000299185 ASAP1Q9ULH1 1129 aa8.48□□□□□ -1.05
DEPDC4-201ENST00000299185 UBR2Q8IWV8 1755 aa8.48□□□□□ -1.05
DEPDC4-201ENST00000299185 TCERG1O14776 1098 aaKnown RBP8.47□□□□□ -1.05
DEPDC4-201ENST00000299185 ST8SIA5O15466 376 aa8.47□□□□□ -1.05
DEPDC4-201ENST00000299185 WFS1O76024 890 aa8.47□□□□□ -1.05
DEPDC4-201ENST00000299185 LMOD3Q0VAK6 560 aa8.47□□□□□ -1.05
DEPDC4-201ENST00000299185 TEFQ10587 303 aa8.47□□□□□ -1.05
DEPDC4-201ENST00000299185 NFATC2IPQ8NCF5 419 aa8.47□□□□□ -1.05
DEPDC4-201ENST00000299185 RBM46Q8TBY0 533 aaKnown RBP8.47□□□□□ -1.05
DEPDC4-201ENST00000299185 TMOD3Q9NYL9 352 aa8.47□□□□□ -1.05
DEPDC4-201ENST00000299185 PALLDQ8WX93 1383 aa8.47□□□□□ -1.05
DEPDC4-201ENST00000299185 HSP90AB1P08238 724 aaKnown RBP8.46□□□□□ -1.06
DEPDC4-201ENST00000299185 CCDC27Q2M243 656 aa8.46□□□□□ -1.06
DEPDC4-201ENST00000299185 SLC4A9Q96Q91 983 aa8.46□□□□□ -1.06
DEPDC4-201ENST00000299185 SLC6A16Q9GZN6 736 aa8.46□□□□□ -1.06
DEPDC4-201ENST00000299185 TMEM134Q9H6X4 195 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms