RNA–Protein interactions for RNA: ENST00000264012.8

CDH3-201, Transcript of cadherin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH3, Length 4,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-201ENST00000264012 IARSP41252 1262 aaKnown RBP16.29■□□□□ 0.2
CDH3-201ENST00000264012 CKAP2LQ8IYA6 745 aa16.29■□□□□ 0.2
CDH3-201ENST00000264012 ANAPC15P60006 121 aa16.28■□□□□ 0.2
CDH3-201ENST00000264012 MICU3Q86XE3 530 aa16.28■□□□□ 0.2
CDH3-201ENST00000264012 BRF1Q92994 677 aa16.28■□□□□ 0.2
CDH3-201ENST00000264012 DCAF5Q96JK2 942 aa16.28■□□□□ 0.2
CDH3-201ENST00000264012 SLF2Q8IX21 1173 aa16.28■□□□□ 0.2
CDH3-201ENST00000264012 RBM8AQ9Y5S9 174 aaKnown RBP16.28■□□□□ 0.2
CDH3-201ENST00000264012 ZFYP08048 801 aaPredicted RBP16.28■□□□□ 0.2
CDH3-201ENST00000264012 DDX19AQ9NUU7 478 aaKnown RBP16.28■□□□□ 0.2
CDH3-201ENST00000264012 RNMTO43148 476 aaKnown RBP16.27■□□□□ 0.2
CDH3-201ENST00000264012 PPFIA3O75145 1194 aa16.27■□□□□ 0.2
CDH3-201ENST00000264012 HSPA2P54652 639 aa16.27■□□□□ 0.2
CDH3-201ENST00000264012 MFSD6Q6ZSS7 791 aa16.27■□□□□ 0.2
CDH3-201ENST00000264012 FSIP1Q8NA03 581 aa16.27■□□□□ 0.2
CDH3-201ENST00000264012 ACSBG1Q96GR2 724 aa16.27■□□□□ 0.2
CDH3-201ENST00000264012 PHAXQ9H814 394 aaKnown RBP16.27■□□□□ 0.2
CDH3-201ENST00000264012 CTAGE5O15320 804 aa16.27■□□□□ 0.2
CDH3-201ENST00000264012 LDHCP07864 332 aa16.27■□□□□ 0.2
CDH3-201ENST00000264012 NBPF6Q5VWK0 638 aa16.27■□□□□ 0.2
CDH3-201ENST00000264012 NBPF5PQ86XG9 351 aaPredicted RBP16.27■□□□□ 0.2
CDH3-201ENST00000264012 NBPF4Q96M43 638 aa16.27■□□□□ 0.2
CDH3-201ENST00000264012 ATP6V1AP38606 617 aa16.27■□□□□ 0.19
CDH3-201ENST00000264012 NOM1Q5C9Z4 860 aaKnown RBP16.27■□□□□ 0.19
CDH3-201ENST00000264012 CCDC144CPQ8IYA2 1237 aa16.27■□□□□ 0.19
CDH3-201ENST00000264012 TCEANC2Q96MN5 208 aa16.27■□□□□ 0.19
CDH3-201ENST00000264012 RFC4P35249 363 aa16.27■□□□□ 0.19
CDH3-201ENST00000264012 RAB11FIP4Q86YS3 637 aa16.27■□□□□ 0.19
CDH3-201ENST00000264012 PKNOX2Q96KN3 472 aa16.27■□□□□ 0.19
CDH3-201ENST00000264012 NECAB1Q8N987 351 aa16.26■□□□□ 0.19
CDH3-201ENST00000264012 MCM5P33992 734 aa16.26■□□□□ 0.19
CDH3-201ENST00000264012 SOS1Q07889 1333 aaPredicted RBP16.26■□□□□ 0.19
CDH3-201ENST00000264012 METAP2P50579 478 aaKnown RBP eCLIP16.26■□□□□ 0.19
CDH3-201ENST00000264012 NLRP5P59047 1200 aa16.26■□□□□ 0.19
CDH3-201ENST00000264012 DDB1Q16531 1140 aa16.26■□□□□ 0.19
CDH3-201ENST00000264012 KLHL10Q6JEL2 608 aa16.26■□□□□ 0.19
CDH3-201ENST00000264012 EIF5P55010 431 aaKnown RBP16.26■□□□□ 0.19
CDH3-201ENST00000264012 CCDC194A0A1B0GVG4 234 aa16.25■□□□□ 0.19
CDH3-201ENST00000264012 ZBTB7BO15156 539 aaPredicted RBP16.25■□□□□ 0.19
CDH3-201ENST00000264012 MCMDC2Q4G0Z9 681 aa16.25■□□□□ 0.19
CDH3-201ENST00000264012 PLEKHM2Q8IWE5 1019 aa16.25■□□□□ 0.19
CDH3-201ENST00000264012 SBNO1A3KN83 1393 aa16.25■□□□□ 0.19
CDH3-201ENST00000264012 CCDC96Q2M329 555 aa16.25■□□□□ 0.19
CDH3-201ENST00000264012 TTC41PQ6P2S7 1318 aa16.25■□□□□ 0.19
CDH3-201ENST00000264012 PTPRTO14522 1441 aa16.25■□□□□ 0.19
CDH3-201ENST00000264012 PRKCSHP14314 528 aaPredicted RBP16.25■□□□□ 0.19
CDH3-201ENST00000264012 SFPQP23246 707 aaKnown RBP eCLIP16.25■□□□□ 0.19
CDH3-201ENST00000264012 G2E3Q7L622 706 aa16.25■□□□□ 0.19
CDH3-201ENST00000264012 PDCL3Q9H2J4 239 aa16.25■□□□□ 0.19
CDH3-201ENST00000264012 TRIM35Q9UPQ4 493 aa16.25■□□□□ 0.19
CDH3-201ENST00000264012 BAG3O95817 575 aa16.24■□□□□ 0.19
CDH3-201ENST00000264012 KLHL40Q2TBA0 621 aa16.24■□□□□ 0.19
CDH3-201ENST00000264012 TSPY2A6NKD2 308 aa16.24■□□□□ 0.19
CDH3-201ENST00000264012 RBM10P98175 930 aaKnown RBP16.24■□□□□ 0.19
CDH3-201ENST00000264012 ANKRD18AQ8IVF6 992 aa16.24■□□□□ 0.19
CDH3-201ENST00000264012 PDE4BQ07343 736 aa16.24■□□□□ 0.19
CDH3-201ENST00000264012 TXLNBQ8N3L3 684 aa16.24■□□□□ 0.19
CDH3-201ENST00000264012 LRRC2Q9BYS8 371 aa16.24■□□□□ 0.19
CDH3-201ENST00000264012 USP25Q9UHP3 1055 aa16.24■□□□□ 0.19
CDH3-201ENST00000264012 SETQ01105 290 aaPredicted RBP16.24■□□□□ 0.19
CDH3-201ENST00000264012 SPTY2D1Q68D10 685 aaPredicted RBP16.24■□□□□ 0.19
CDH3-201ENST00000264012 CNNM3Q8NE01 707 aa16.24■□□□□ 0.19
CDH3-201ENST00000264012 SNX21Q969T3 373 aa16.24■□□□□ 0.19
CDH3-201ENST00000264012 DDX21Q9NR30 783 aaKnown RBP eCLIP16.24■□□□□ 0.19
CDH3-201ENST00000264012 KLF18A0A0U1RQI7 1052 aa16.23■□□□□ 0.19
CDH3-201ENST00000264012 UBE2HP62256 183 aa16.23■□□□□ 0.19
CDH3-201ENST00000264012 SMARCC1Q92922 1105 aaPredicted RBP16.23■□□□□ 0.19
CDH3-201ENST00000264012 ZNF219Q9P2Y4 722 aaPredicted RBP16.23■□□□□ 0.19
CDH3-201ENST00000264012 TOM1O60784 492 aa16.23■□□□□ 0.19
CDH3-201ENST00000264012 ZSCAN22P10073 491 aaPredicted RBP16.23■□□□□ 0.19
CDH3-201ENST00000264012 MYO6Q9UM54 1294 aa16.23■□□□□ 0.19
CDH3-201ENST00000264012 NMIQ13287 307 aaPredicted RBP16.23■□□□□ 0.19
CDH3-201ENST00000264012 KRI1Q8N9T8 703 aaKnown RBP16.23■□□□□ 0.19
CDH3-201ENST00000264012 EPB41L2O43491 1005 aaKnown RBP16.23■□□□□ 0.19
CDH3-201ENST00000264012 KIF5BP33176 963 aa16.23■□□□□ 0.19
CDH3-201ENST00000264012 SIRT1Q96EB6 747 aa16.23■□□□□ 0.19
CDH3-201ENST00000264012 IQSEC3Q9UPP2 1182 aaPredicted RBP16.23■□□□□ 0.19
CDH3-201ENST00000264012 NIP7Q9Y221 180 aaKnown RBP eCLIP16.23■□□□□ 0.19
CDH3-201ENST00000264012 CNKSR2Q8WXI2 1034 aa16.22■□□□□ 0.19
CDH3-201ENST00000264012 CHL1O00533 1208 aa16.22■□□□□ 0.19
CDH3-201ENST00000264012 ORAI2Q96SN7 254 aa16.22■□□□□ 0.19
CDH3-201ENST00000264012 SLC26A6Q9BXS9 759 aa16.22■□□□□ 0.19
CDH3-201ENST00000264012 DZIP3Q86Y13 1208 aaKnown RBP16.22■□□□□ 0.19
CDH3-201ENST00000264012 SETDB2Q96T68 719 aa16.22■□□□□ 0.19
CDH3-201ENST00000264012 RBM27Q9P2N5 1060 aaKnown RBP16.22■□□□□ 0.19
CDH3-201ENST00000264012 SLC9C2Q5TAH2 1124 aa16.22■□□□□ 0.19
CDH3-201ENST00000264012 CCDC181Q5TID7 509 aa16.21■□□□□ 0.19
CDH3-201ENST00000264012 RAB34Q9BZG1 259 aa16.21■□□□□ 0.19
CDH3-201ENST00000264012 CRNKL1Q9BZJ0 848 aaKnown RBP16.21■□□□□ 0.19
CDH3-201ENST00000264012 ZSCAN16Q9H4T2 348 aaPredicted RBP16.21■□□□□ 0.19
CDH3-201ENST00000264012 PAG1Q9NWQ8 432 aa16.21■□□□□ 0.19
CDH3-201ENST00000264012 CYP7A1P22680 504 aa16.21■□□□□ 0.19
CDH3-201ENST00000264012 WWC2Q6AWC2 1192 aa16.21■□□□□ 0.19
CDH3-201ENST00000264012 NLRP3Q96P20 1036 aa16.21■□□□□ 0.19
CDH3-201ENST00000264012 ARHGAP29Q52LW3 1261 aa16.21■□□□□ 0.19
CDH3-201ENST00000264012 BABAM1Q9NWV8 329 aa16.21■□□□□ 0.19
CDH3-201ENST00000264012 UQCRHLA0A096LP55 91 aa16.21■□□□□ 0.18
CDH3-201ENST00000264012 UBAP1LF5GYI3 381 aa16.21■□□□□ 0.18
CDH3-201ENST00000264012 UQCRHP07919 91 aa16.21■□□□□ 0.18
CDH3-201ENST00000264012 KAT14Q9H8E8 782 aa16.21■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms