RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 SEPT11Q9NVA2 429 aaKnown RBP12.44□□□□□ -0.42
CD44-201ENST00000263398 CATIPQ7Z7H3 387 aa12.44□□□□□ -0.42
CD44-201ENST00000263398 DUOX2Q9NRD8 1548 aa12.44□□□□□ -0.42
CD44-201ENST00000263398 FGFR1OPO95684 399 aaKnown RBP12.44□□□□□ -0.42
CD44-201ENST00000263398 CNKSR2Q8WXI2 1034 aa12.44□□□□□ -0.42
CD44-201ENST00000263398 MCM3P25205 808 aa12.44□□□□□ -0.42
CD44-201ENST00000263398 USP8P40818 1118 aa12.44□□□□□ -0.42
CD44-201ENST00000263398 TMEM67Q5HYA8 995 aa12.44□□□□□ -0.42
CD44-201ENST00000263398 CACNA2D4Q7Z3S7 1137 aa12.44□□□□□ -0.42
CD44-201ENST00000263398 DZIP1Q86YF9 867 aaKnown RBP12.44□□□□□ -0.42
CD44-201ENST00000263398 TNNQ9UQP3 1299 aa12.44□□□□□ -0.42
CD44-201ENST00000263398 RBM8AQ9Y5S9 174 aaKnown RBP12.44□□□□□ -0.42
CD44-201ENST00000263398 KDM6BO15054 1643 aa12.43□□□□□ -0.42
CD44-201ENST00000263398 ERICH4A6NGS2 130 aa12.43□□□□□ -0.42
CD44-201ENST00000263398 YEATS4O95619 227 aa12.43□□□□□ -0.42
CD44-201ENST00000263398 WWC2Q6AWC2 1192 aa12.43□□□□□ -0.42
CD44-201ENST00000263398 ZNF444Q8N0Y2 327 aaPredicted RBP12.43□□□□□ -0.42
CD44-201ENST00000263398 NECAB1Q8N987 351 aa12.43□□□□□ -0.42
CD44-201ENST00000263398 NLRP5P59047 1200 aa12.43□□□□□ -0.42
CD44-201ENST00000263398 HAND2P61296 217 aa12.43□□□□□ -0.42
CD44-201ENST00000263398 TAF3Q5VWG9 929 aa12.43□□□□□ -0.42
CD44-201ENST00000263398 KANK3Q6NY19 840 aa12.43□□□□□ -0.42
CD44-201ENST00000263398 MICU3Q86XE3 530 aa12.43□□□□□ -0.42
CD44-201ENST00000263398 FAM200AQ8TCP9 573 aa12.43□□□□□ -0.42
CD44-201ENST00000263398 ZFYP08048 801 aaPredicted RBP12.43□□□□□ -0.42
CD44-201ENST00000263398 SEPT7Q16181 437 aaKnown RBP12.43□□□□□ -0.42
CD44-201ENST00000263398 TSG101Q99816 390 aa12.43□□□□□ -0.42
CD44-201ENST00000263398 CHPF2Q9P2E5 772 aa12.43□□□□□ -0.42
CD44-201ENST00000263398 DNMT1P26358 1616 aaKnown RBP12.42□□□□□ -0.42
CD44-201ENST00000263398 METAP2P50579 478 aaKnown RBP eCLIP12.42□□□□□ -0.42
CD44-201ENST00000263398 RAB3GAP1Q15042 981 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 USO1O60763 962 aaKnown RBP12.42□□□□□ -0.42
CD44-201ENST00000263398 HMGB2P26583 209 aaKnown RBP12.42□□□□□ -0.42
CD44-201ENST00000263398 PAFAH1B1P43034 410 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 DDX46Q7L014 1031 aaKnown RBP12.42□□□□□ -0.42
CD44-201ENST00000263398 KRT28Q7Z3Y7 464 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 USP48Q86UV5 1035 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 TAX1BP1Q86VP1 789 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 C16orf71Q8IYS4 520 aaPredicted RBP12.42□□□□□ -0.42
CD44-201ENST00000263398 CPLX3Q8WVH0 158 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 NUP88Q99567 741 aaPredicted RBP12.42□□□□□ -0.42
CD44-201ENST00000263398 KIF20AO95235 890 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 GPTP24298 496 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 SNW1Q13573 536 aaKnown RBP12.42□□□□□ -0.42
CD44-201ENST00000263398 VPS36Q86VN1 386 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 CCDC150Q8NCX0 1101 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 ANKRD24Q8TF21 1146 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 PYM1Q9BRP8 204 aaKnown RBP12.42□□□□□ -0.42
CD44-201ENST00000263398 PANK2Q9BZ23 570 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 PAXBP1Q9Y5B6 917 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 GRM8O00222 908 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 EIF4A2Q14240 407 aaKnown RBP12.42□□□□□ -0.42
CD44-201ENST00000263398 CARD14Q9BXL6 1004 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 CNPY2Q9Y2B0 182 aa12.42□□□□□ -0.42
CD44-201ENST00000263398 TMEM266Q2M3C6 531 aa12.41□□□□□ -0.42
CD44-201ENST00000263398 WDR7Q9Y4E6 1490 aa12.41□□□□□ -0.42
CD44-201ENST00000263398 CEP85Q6P2H3 762 aa12.41□□□□□ -0.42
CD44-201ENST00000263398 KSR2Q6VAB6 950 aa12.41□□□□□ -0.42
CD44-201ENST00000263398 TCEANC2Q96MN5 208 aa12.41□□□□□ -0.42
CD44-201ENST00000263398 TMOD2Q9NZR1 351 aa12.41□□□□□ -0.42
CD44-201ENST00000263398 F13A1P00488 732 aa12.41□□□□□ -0.42
CD44-201ENST00000263398 MFSD6Q6ZSS7 791 aa12.41□□□□□ -0.42
CD44-201ENST00000263398 ZPR1O75312 459 aa12.4□□□□□ -0.42
CD44-201ENST00000263398 TSPYL6Q8N831 410 aa12.4□□□□□ -0.42
CD44-201ENST00000263398 KCNG4Q8TDN1 519 aa12.4□□□□□ -0.42
CD44-201ENST00000263398 ZKSCAN5Q9Y2L8 839 aa12.4□□□□□ -0.42
CD44-201ENST00000263398 KLF18A0A0U1RQI7 1052 aa12.4□□□□□ -0.42
CD44-201ENST00000263398 KIF5BP33176 963 aa12.4□□□□□ -0.42
CD44-201ENST00000263398 RBM25P49756 843 aaKnown RBP12.4□□□□□ -0.42
CD44-201ENST00000263398 ANKRD18AQ8IVF6 992 aa12.4□□□□□ -0.42
CD44-201ENST00000263398 INTS4Q96HW7 963 aaKnown RBP12.4□□□□□ -0.42
CD44-201ENST00000263398 ARHGEF12Q9NZN5 1544 aa12.4□□□□□ -0.42
CD44-201ENST00000263398 UQCRFS1P1P0C7P4 283 aa12.4□□□□□ -0.42
CD44-201ENST00000263398 SYKP43405 635 aa12.4□□□□□ -0.42
CD44-201ENST00000263398 PLEKHM2Q8IWE5 1019 aa12.4□□□□□ -0.42
CD44-201ENST00000263398 LINS1Q8NG48 757 aa12.4□□□□□ -0.42
CD44-201ENST00000263398 TCP11L1Q9NUJ3 509 aa12.4□□□□□ -0.42
CD44-201ENST00000263398 DACT1Q9NYF0 836 aa12.4□□□□□ -0.42
CD44-201ENST00000263398 TTC41PQ6P2S7 1318 aa12.4□□□□□ -0.42
CD44-201ENST00000263398 POTEB2H3BUK9 544 aa12.4□□□□□ -0.43
CD44-201ENST00000263398 UBA7P41226 1012 aa12.4□□□□□ -0.43
CD44-201ENST00000263398 NOLC1Q14978 699 aaKnown RBP eCLIP12.4□□□□□ -0.43
CD44-201ENST00000263398 ZRSR2Q15696 482 aaKnown RBP12.4□□□□□ -0.43
CD44-201ENST00000263398 CDC5LQ99459 802 aaKnown RBP12.4□□□□□ -0.43
CD44-201ENST00000263398 CCDC171Q6TFL3 1326 aa12.39□□□□□ -0.43
CD44-201ENST00000263398 ENOX2Q16206 610 aaKnown RBP12.39□□□□□ -0.43
CD44-201ENST00000263398 MCMDC2Q4G0Z9 681 aa12.39□□□□□ -0.43
CD44-201ENST00000263398 COPS6Q7L5N1 327 aa12.39□□□□□ -0.43
CD44-201ENST00000263398 XAGE3Q8WTP9 111 aa12.39□□□□□ -0.43
CD44-201ENST00000263398 CEP135Q66GS9 1140 aa12.39□□□□□ -0.43
CD44-201ENST00000263398 SLC26A6Q9BXS9 759 aa12.39□□□□□ -0.43
CD44-201ENST00000263398 PPFIA3O75145 1194 aa12.39□□□□□ -0.43
CD44-201ENST00000263398 SEC24BO95487 1268 aa12.39□□□□□ -0.43
CD44-201ENST00000263398 CETN2P41208 172 aa12.39□□□□□ -0.43
CD44-201ENST00000263398 HS1BP3Q53T59 392 aa12.39□□□□□ -0.43
CD44-201ENST00000263398 CRACR2BQ8N4Y2 399 aaPredicted RBP12.39□□□□□ -0.43
CD44-201ENST00000263398 CCDC12Q8WUD4 166 aaPredicted RBP12.39□□□□□ -0.43
CD44-201ENST00000263398 MRPS27Q92552 414 aaKnown RBP12.39□□□□□ -0.43
CD44-201ENST00000263398 ANKIB1Q9P2G1 1089 aa12.39□□□□□ -0.43
CD44-201ENST00000263398 NPHP3Q7Z494 1330 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms