RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 TTC14Q96N46 770 aa12.06□□□□□ -0.48
LIG3-201ENST00000262327 PRDM11Q9NQV5 511 aa12.06□□□□□ -0.48
LIG3-201ENST00000262327 PLEKHO1Q53GL0 409 aaPredicted RBP12.06□□□□□ -0.48
LIG3-201ENST00000262327 ZHX1Q9UKY1 873 aaPredicted RBP12.06□□□□□ -0.48
LIG3-201ENST00000262327 LIMCH1Q9UPQ0 1083 aa12.06□□□□□ -0.48
LIG3-201ENST00000262327 RAB11FIP3O75154 756 aa12.05□□□□□ -0.48
LIG3-201ENST00000262327 RGPD2P0DJD1 1756 aa12.05□□□□□ -0.48
LIG3-201ENST00000262327 GJB2P29033 226 aa12.05□□□□□ -0.48
LIG3-201ENST00000262327 SIL1Q9H173 461 aa12.05□□□□□ -0.48
LIG3-201ENST00000262327 C9orf78Q9NZ63 289 aaPredicted RBP12.05□□□□□ -0.48
LIG3-201ENST00000262327 ADCY5O95622 1261 aa12.05□□□□□ -0.48
LIG3-201ENST00000262327 KCNJ4P48050 445 aa12.05□□□□□ -0.48
LIG3-201ENST00000262327 TEFQ10587 303 aa12.05□□□□□ -0.48
LIG3-201ENST00000262327 CHRNA2Q15822 529 aa12.05□□□□□ -0.48
LIG3-201ENST00000262327 CCDC8Q9H0W5 538 aaPredicted RBP12.05□□□□□ -0.48
LIG3-201ENST00000262327 BTBD11A6QL63 1104 aa12.05□□□□□ -0.48
LIG3-201ENST00000262327 KLHDC4Q8TBB5 520 aa12.05□□□□□ -0.48
LIG3-201ENST00000262327 FAM227BQ96M60 508 aa12.05□□□□□ -0.48
LIG3-201ENST00000262327 MAP3K2Q9Y2U5 619 aa12.05□□□□□ -0.48
LIG3-201ENST00000262327 PHLPP1O60346 1717 aa12.04□□□□□ -0.48
LIG3-201ENST00000262327 F13A1P00488 732 aa12.04□□□□□ -0.48
LIG3-201ENST00000262327 COL16A1Q07092 1604 aaPredicted RBP12.04□□□□□ -0.48
LIG3-201ENST00000262327 CSB-PGBD3P0DP91 1061 aa12.04□□□□□ -0.48
LIG3-201ENST00000262327 ZNF530Q6P9A1 599 aaPredicted RBP12.04□□□□□ -0.48
LIG3-201ENST00000262327 AACSQ86V21 672 aa12.04□□□□□ -0.48
LIG3-201ENST00000262327 PDRG1Q9NUG6 133 aa12.04□□□□□ -0.48
LIG3-201ENST00000262327 NLRP2Q9NX02 1062 aa12.04□□□□□ -0.48
LIG3-201ENST00000262327 IFIT2P09913 472 aaKnown RBP12.03□□□□□ -0.48
LIG3-201ENST00000262327 CCDC183Q5T5S1 534 aa12.03□□□□□ -0.48
LIG3-201ENST00000262327 CLASRPQ8N2M8 674 aaKnown RBP12.03□□□□□ -0.48
LIG3-201ENST00000262327 SPC24Q8NBT2 197 aa12.03□□□□□ -0.48
LIG3-201ENST00000262327 HYPKQ9NX55 129 aa12.03□□□□□ -0.48
LIG3-201ENST00000262327 TAF6LQ9Y6J9 622 aa12.03□□□□□ -0.48
LIG3-201ENST00000262327 PHF14O94880 888 aa12.03□□□□□ -0.48
LIG3-201ENST00000262327 CAMK4Q16566 473 aa12.03□□□□□ -0.48
LIG3-201ENST00000262327 BABAM1Q9NWV8 329 aa12.03□□□□□ -0.48
LIG3-201ENST00000262327 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.03□□□□□ -0.484e-6■□□□□ 11.2
LIG3-201ENST00000262327 WDR17Q8IZU2 1322 aa12.03□□□□□ -0.48
LIG3-201ENST00000262327 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.02□□□□□ -0.48
LIG3-201ENST00000262327 UBAP1LF5GYI3 381 aa12.02□□□□□ -0.48
LIG3-201ENST00000262327 KIAA2012Q0VF49 1180 aa12.02□□□□□ -0.48
LIG3-201ENST00000262327 STK3Q13188 491 aa12.02□□□□□ -0.48
LIG3-201ENST00000262327 ME3Q16798 604 aa12.02□□□□□ -0.48
LIG3-201ENST00000262327 TLR7Q9NYK1 1049 aaKnown RBP12.02□□□□□ -0.48
LIG3-201ENST00000262327 CCDC9Q9Y3X0 531 aaKnown RBP12.02□□□□□ -0.48
LIG3-201ENST00000262327 LRRC37A3O60309 1634 aa12.02□□□□□ -0.48
LIG3-201ENST00000262327 COL5A2P05997 1499 aaPredicted RBP12.02□□□□□ -0.49
LIG3-201ENST00000262327 ST3GAL1Q11201 340 aa12.02□□□□□ -0.49
LIG3-201ENST00000262327 AKAP4Q5JQC9 854 aa12.02□□□□□ -0.49
LIG3-201ENST00000262327 EDC3Q96F86 508 aaKnown RBP12.02□□□□□ -0.49
LIG3-201ENST00000262327 BOLA2Q9H3K6 86 aa12.02□□□□□ -0.49
LIG3-201ENST00000262327 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.02□□□□□ -0.49
LIG3-201ENST00000262327 NDUFB9Q9Y6M9 179 aa12.02□□□□□ -0.49
LIG3-201ENST00000262327 AOX1Q06278 1338 aa12.02□□□□□ -0.49
LIG3-201ENST00000262327 AP5Z1O43299 807 aa12.02□□□□□ -0.49
LIG3-201ENST00000262327 GLRX3O76003 335 aaKnown RBP12.02□□□□□ -0.49
LIG3-201ENST00000262327 RAPGEF4Q8WZA2 1011 aa12.02□□□□□ -0.49
LIG3-201ENST00000262327 ADCY9O60503 1353 aa12.02□□□□□ -0.49
LIG3-201ENST00000262327 OVOS2A0A0G2JMS6 1433 aa12.01□□□□□ -0.49
LIG3-201ENST00000262327 TATP17735 454 aaPredicted RBP12.01□□□□□ -0.49
LIG3-201ENST00000262327 PIP4K2AP48426 406 aaPredicted RBP12.01□□□□□ -0.49
LIG3-201ENST00000262327 MTMR6Q9Y217 621 aa12.01□□□□□ -0.49
LIG3-201ENST00000262327 COL14A1Q05707 1796 aaKnown RBP12.01□□□□□ -0.49
LIG3-201ENST00000262327 CHGBP05060 677 aa12.01□□□□□ -0.49
LIG3-201ENST00000262327 UBE2HP62256 183 aa12.01□□□□□ -0.49
LIG3-201ENST00000262327 CERKQ8TCT0 537 aa12.01□□□□□ -0.49
LIG3-201ENST00000262327 ECHDC1Q9NTX5 307 aa12.01□□□□□ -0.49
LIG3-201ENST00000262327 NMIQ13287 307 aaPredicted RBP12□□□□□ -0.49
LIG3-201ENST00000262327 CSPP1Q1MSJ5 1256 aa12□□□□□ -0.49
LIG3-201ENST00000262327 PAXIP1Q6ZW49 1069 aaPredicted RBP12□□□□□ -0.49
LIG3-201ENST00000262327 TFIP11Q9UBB9 837 aaKnown RBP12□□□□□ -0.49
LIG3-201ENST00000262327 TPCN1Q9ULQ1 816 aa12□□□□□ -0.49
LIG3-201ENST00000262327 RBM8AQ9Y5S9 174 aaKnown RBP12□□□□□ -0.49
LIG3-201ENST00000262327 CYP46A1Q9Y6A2 500 aa12□□□□□ -0.49
LIG3-201ENST00000262327 CEMIPQ8WUJ3 1361 aa12□□□□□ -0.49
LIG3-201ENST00000262327 PIP4K2BP78356 416 aa12□□□□□ -0.49
LIG3-201ENST00000262327 TUBGCP6Q96RT7 1819 aa12□□□□□ -0.49
LIG3-201ENST00000262327 EAF2Q96CJ1 260 aaPredicted RBP12□□□□□ -0.49
LIG3-201ENST00000262327 CARD10Q9BWT7 1032 aa12□□□□□ -0.49
LIG3-201ENST00000262327 C1orf141Q5JVX7 400 aa11.99□□□□□ -0.49
LIG3-201ENST00000262327 SASS6Q6UVJ0 657 aa11.99□□□□□ -0.49
LIG3-201ENST00000262327 CDC37L1Q7L3B6 337 aa11.99□□□□□ -0.49
LIG3-201ENST00000262327 SMAP1Q8IYB5 467 aaPredicted RBP11.99□□□□□ -0.49
LIG3-201ENST00000262327 SUCLG2Q96I99 432 aa11.99□□□□□ -0.49
LIG3-201ENST00000262327 PPFIA3O75145 1194 aa11.99□□□□□ -0.49
LIG3-201ENST00000262327 MYL6BP14649 208 aa11.99□□□□□ -0.49
LIG3-201ENST00000262327 MCM5P33992 734 aa11.99□□□□□ -0.49
LIG3-201ENST00000262327 FOSBP53539 338 aa11.99□□□□□ -0.49
LIG3-201ENST00000262327 SLC39A6Q13433 755 aa11.99□□□□□ -0.49
LIG3-201ENST00000262327 LARP1BQ659C4 914 aaKnown RBP11.99□□□□□ -0.49
LIG3-201ENST00000262327 CREB3L3Q68CJ9 461 aa11.99□□□□□ -0.49
LIG3-201ENST00000262327 CKAP2LQ8IYA6 745 aa11.99□□□□□ -0.49
LIG3-201ENST00000262327 BICC1Q9H694 974 aaKnown RBP11.99□□□□□ -0.49
LIG3-201ENST00000262327 A0A0D9SFI3 127 aa11.98□□□□□ -0.49
LIG3-201ENST00000262327 SASH1O94885 1247 aa11.98□□□□□ -0.49
LIG3-201ENST00000262327 EVA1CP58658 441 aa11.98□□□□□ -0.49
LIG3-201ENST00000262327 NOLC1Q14978 699 aaKnown RBP eCLIP11.98□□□□□ -0.49
LIG3-201ENST00000262327 RUFY2Q8WXA3 655 aa11.98□□□□□ -0.49
LIG3-201ENST00000262327 IL17RAQ96F46 866 aa11.98□□□□□ -0.49
LIG3-201ENST00000262327 PRDM10Q9NQV6 1147 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms