RNA–Protein interactions for RNA: ENST00000003912.7

NIPAL3-201, Transcript of NIPA like domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene NIPAL3, Length 5,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-201ENST00000003912 NSFL1CQ9UNZ2 370 aaKnown RBP12.11□□□□□ -0.47
NIPAL3-201ENST00000003912 NLRP1Q9C000 1473 aa12.11□□□□□ -0.47
NIPAL3-201ENST00000003912 CYP7A1P22680 504 aa12.11□□□□□ -0.47
NIPAL3-201ENST00000003912 BAG6P46379 1132 aa12.11□□□□□ -0.47
NIPAL3-201ENST00000003912 HMGN5P82970 282 aaKnown RBP12.11□□□□□ -0.47
NIPAL3-201ENST00000003912 TNMDQ9H2S6 317 aa12.11□□□□□ -0.47
NIPAL3-201ENST00000003912 KAT14Q9H8E8 782 aa12.11□□□□□ -0.47
NIPAL3-201ENST00000003912 SMC2O95347 1197 aa12.11□□□□□ -0.47
NIPAL3-201ENST00000003912 HOXB7P09629 217 aa12.11□□□□□ -0.47
NIPAL3-201ENST00000003912 SSRP1Q08945 709 aaKnown RBP12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 RAB34Q9BZG1 259 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 UPF3BQ9BZI7 483 aaKnown RBP12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 TRIM5Q9C035 493 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 TSPY26PQ9H489 355 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 SLC52A2Q9HAB3 445 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 HMG20BQ9P0W2 317 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 TRAK2O60296 914 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 PRIM1P49642 420 aaKnown RBP12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 NFKBIBQ15653 356 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 NAA16Q6N069 864 aaPredicted RBP12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 CCDC83Q8IWF9 413 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 ANKRD44Q8N8A2 993 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 CLEC11AQ9Y240 323 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 TSPOAP1O95153 1857 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 NF2P35240 595 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 NCOA7Q8NI08 942 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 VAMP4O75379 141 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 CCDC192P0DO97 292 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 C8orf76Q96K31 380 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 HECW2Q9P2P5 1572 aa12.1□□□□□ -0.47
NIPAL3-201ENST00000003912 HDAC1Q13547 482 aaPredicted RBP12.09□□□□□ -0.47
NIPAL3-201ENST00000003912 BMP2KLQ5H9B9 411 aa12.09□□□□□ -0.47
NIPAL3-201ENST00000003912 TMEM67Q5HYA8 995 aa12.09□□□□□ -0.47
NIPAL3-201ENST00000003912 PPP4R3AQ6IN85 833 aa12.09□□□□□ -0.47
NIPAL3-201ENST00000003912 PLBD2Q8NHP8 589 aa12.09□□□□□ -0.47
NIPAL3-201ENST00000003912 PDCL3Q9H2J4 239 aa12.09□□□□□ -0.47
NIPAL3-201ENST00000003912 PLXNC1O60486 1568 aa12.09□□□□□ -0.47
NIPAL3-201ENST00000003912 PLCG2P16885 1265 aa12.09□□□□□ -0.47
NIPAL3-201ENST00000003912 CCDC87Q9NVE4 849 aa12.09□□□□□ -0.47
NIPAL3-201ENST00000003912 CCDC194A0A1B0GVG4 234 aa12.09□□□□□ -0.47
NIPAL3-201ENST00000003912 F8W031 263 aaPredicted RBP12.09□□□□□ -0.47
NIPAL3-201ENST00000003912 BRPF1P55201 1214 aaPredicted RBP12.09□□□□□ -0.47
NIPAL3-201ENST00000003912 ZNHIT6Q9NWK9 470 aaKnown RBP12.09□□□□□ -0.47
NIPAL3-201ENST00000003912 CCDC173Q0VFZ6 552 aa12.08□□□□□ -0.47
NIPAL3-201ENST00000003912 TRAF1Q13077 416 aa12.08□□□□□ -0.47
NIPAL3-201ENST00000003912 TTC22Q5TAA0 569 aa12.08□□□□□ -0.47
NIPAL3-201ENST00000003912 MPHOSPH6Q99547 160 aaKnown RBP12.08□□□□□ -0.47
NIPAL3-201ENST00000003912 APBA3O96018 575 aa12.08□□□□□ -0.48
NIPAL3-201ENST00000003912 MATR3P43243 847 aaKnown RBP eCLIP12.08□□□□□ -0.48
NIPAL3-201ENST00000003912 NLRP5P59047 1200 aa12.08□□□□□ -0.48
NIPAL3-201ENST00000003912 TMEM266Q2M3C6 531 aa12.08□□□□□ -0.48
NIPAL3-201ENST00000003912 RNF214Q8ND24 703 aa12.08□□□□□ -0.48
NIPAL3-201ENST00000003912 TANGO6Q9C0B7 1094 aa12.08□□□□□ -0.48
NIPAL3-201ENST00000003912 IQSEC3Q9UPP2 1182 aaPredicted RBP12.08□□□□□ -0.48
NIPAL3-201ENST00000003912 TTC37Q6PGP7 1564 aa12.08□□□□□ -0.48
NIPAL3-201ENST00000003912 CWF19L2Q2TBE0 894 aaKnown RBP12.08□□□□□ -0.48
NIPAL3-201ENST00000003912 KRT23Q9C075 422 aa12.08□□□□□ -0.48
NIPAL3-201ENST00000003912 LIMCH1Q9UPQ0 1083 aa12.08□□□□□ -0.48
NIPAL3-201ENST00000003912 RDXP35241 583 aaKnown RBP12.08□□□□□ -0.48
NIPAL3-201ENST00000003912 GPS2Q13227 327 aa12.08□□□□□ -0.48
NIPAL3-201ENST00000003912 SH3TC1Q8TE82 1336 aa12.08□□□□□ -0.48
NIPAL3-201ENST00000003912 DHX8Q14562 1220 aaKnown RBP12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 C16orf71Q8IYS4 520 aaPredicted RBP12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 ERVV-2B6SEH9 535 aa12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 CCDC82Q8N4S0 544 aa12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 CCDC39Q9UFE4 941 aa12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 SLC4A4Q9Y6R1 1079 aa12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 PER1O15534 1290 aaPredicted RBP12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 SERPINC1P01008 464 aa12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 LMOD1P29536 600 aaPredicted RBP12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 NASPP49321 788 aaPredicted RBP12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 TSPYL6Q8N831 410 aa12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 SCLT1Q96NL6 688 aa12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 CNNM2Q9H8M5 875 aa12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 TSPY3P0CV98 308 aa12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 TSPY8P0CW00 308 aa12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 IL27Q8NEV9 243 aa12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 NEK1Q96PY6 1258 aa12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 LUC7LQ9NQ29 371 aaKnown RBP12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 TRPC5Q9UL62 973 aaPredicted RBP12.07□□□□□ -0.48
NIPAL3-201ENST00000003912 BAG4O95429 457 aaKnown RBP12.06□□□□□ -0.48
NIPAL3-201ENST00000003912 MRE11P49959 708 aa12.06□□□□□ -0.48
NIPAL3-201ENST00000003912 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.06□□□□□ -0.482e-6■■■■■ 121.8
NIPAL3-201ENST00000003912 HAND2P61296 217 aa12.06□□□□□ -0.48
NIPAL3-201ENST00000003912 SLC9C2Q5TAH2 1124 aa12.06□□□□□ -0.48
NIPAL3-201ENST00000003912 ESR2Q92731 530 aa12.06□□□□□ -0.48
NIPAL3-201ENST00000003912 CCDC191Q8NCU4 936 aa12.06□□□□□ -0.48
NIPAL3-201ENST00000003912 DNAJC5Q9H3Z4 198 aa12.06□□□□□ -0.48
NIPAL3-201ENST00000003912 GNAT2P19087 354 aa12.06□□□□□ -0.48
NIPAL3-201ENST00000003912 IARSP41252 1262 aaKnown RBP12.06□□□□□ -0.48
NIPAL3-201ENST00000003912 NUCB1Q02818 461 aa12.06□□□□□ -0.48
NIPAL3-201ENST00000003912 TMTC2Q8N394 836 aa12.06□□□□□ -0.48
NIPAL3-201ENST00000003912 PTPRTO14522 1441 aa12.06□□□□□ -0.48
NIPAL3-201ENST00000003912 MCM5P33992 734 aa12.05□□□□□ -0.48
NIPAL3-201ENST00000003912 KRT24Q2M2I5 525 aa12.05□□□□□ -0.48
NIPAL3-201ENST00000003912 METTL22Q9BUU2 404 aaPredicted RBP12.05□□□□□ -0.48
NIPAL3-201ENST00000003912 STX8Q9UNK0 236 aa12.05□□□□□ -0.48
NIPAL3-201ENST00000003912 TRIM21P19474 475 aaKnown RBP12.05□□□□□ -0.48
NIPAL3-201ENST00000003912 PREX2Q70Z35 1606 aa12.05□□□□□ -0.48
NIPAL3-201ENST00000003912 MAGEB6P1A0A0J9YX57 407 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms