RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 NR4A3Q92570 626 aa14.06□□□□□ -0.16
TRIM28-209ENST00000597423 EFHD2Q96C19 240 aaPredicted RBP14.06□□□□□ -0.16
TRIM28-209ENST00000597423 ZG16BQ96DA0 208 aa14.06□□□□□ -0.16
TRIM28-209ENST00000597423 CENPNQ96H22 339 aaPredicted RBP14.06□□□□□ -0.16
TRIM28-209ENST00000597423 SCNM1Q9BWG6 230 aa14.06□□□□□ -0.16
TRIM28-209ENST00000597423 FBXO34Q9NWN3 711 aa14.06□□□□□ -0.16
TRIM28-209ENST00000597423 MSRB2Q9Y3D2 182 aa14.06□□□□□ -0.16
TRIM28-209ENST00000597423 DTNAQ9Y4J8 743 aa14.06□□□□□ -0.16
TRIM28-209ENST00000597423 CDC14CA4D256 554 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 PPM1BO75688 479 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 UTS2O95399 124 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 CST1P01037 141 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 IGKV1D-16P01601 117 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 NGFRP08138 427 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 MAGEA2P43356 314 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 ARHGDIAP52565 204 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 SMIM11AP58511 58 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 CHAF1BQ13112 559 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 IL10RAQ13651 578 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 ATP1A4Q13733 1029 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 ATP6AP1Q15904 470 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 CRTC2Q53ET0 693 aaPredicted RBP14.05□□□□□ -0.16
TRIM28-209ENST00000597423 RNF220Q5VTB9 566 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 OLIG3Q7RTU3 272 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 CARM1Q86X55 608 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 VRK2Q86Y07 508 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 ZNF440Q8IYI8 595 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 CLEC1AQ8NC01 280 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 ZNF248Q8NDW4 579 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 CATSPER1Q8NEC5 780 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 ADAMTS17Q8TE56 1095 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 LRTOMTQ8WZ04 291 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 TTC9Q92623 222 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 SLC35B4Q969S0 331 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 DPH1Q9BZG8 443 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 QRSL1Q9H0R6 528 aaKnown RBP14.05□□□□□ -0.16
TRIM28-209ENST00000597423 ZBTB20Q9HC78 741 aaPredicted RBP14.05□□□□□ -0.16
TRIM28-209ENST00000597423 PRDM4Q9UKN5 801 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 SLC35A3Q9Y2D2 325 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 MRPS18BQ9Y676 258 aaKnown RBP14.05□□□□□ -0.16
TRIM28-209ENST00000597423 ENPP4Q9Y6X5 453 aa14.05□□□□□ -0.16
TRIM28-209ENST00000597423 CEP250Q9BV73 2442 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 SERINC4A6NH21 518 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 ZNF891A8MT65 544 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-209ENST00000597423 NPIPB9F8W1W9 429 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 GTPBP1O00178 669 aaKnown RBP14.04□□□□□ -0.16
TRIM28-209ENST00000597423 CDK2AP1O14519 115 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 TP53I11O14683 189 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 PRKNO60260 465 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-209ENST00000597423 DPM1O60762 260 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 OR2J2O76002 312 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 ZIC2O95409 532 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-209ENST00000597423 SEMG1P04279 462 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 RHCEP18577 417 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 ADH7P40394 386 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 EEF1A1P68104 462 aaKnown RBP14.04□□□□□ -0.16
TRIM28-209ENST00000597423 GK3PQ14409 553 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 KLHL26Q53HC5 615 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 DCAF10Q5QP82 559 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 PDZK1Q5T2W1 519 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 ZNF550Q7Z398 422 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 PRR22Q8IZ63 422 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 ZNF614Q8N883 585 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 TMEM102Q8N9M5 508 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-209ENST00000597423 GPR32P1Q8NGA4 272 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 OR4C3Q8NH37 302 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 ASB15Q8WXK1 588 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 C7orf34Q96L11 122 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 PKP2Q99959 881 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 TBL1XR1Q9BZK7 514 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 CDCP1Q9H5V8 836 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 LIN28AQ9H9Z2 209 aaKnown RBP14.04□□□□□ -0.16
TRIM28-209ENST00000597423 AGPAT4Q9NRZ5 378 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 ABI3Q9P2A4 366 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 NKX1-2Q9UD57 310 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-209ENST00000597423 SDK2Q58EX2 2172 aa14.04□□□□□ -0.16
TRIM28-209ENST00000597423 CDHR4A6H8M9 788 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 TMEM200CA6NKL6 621 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 TMEM229AB2RXF0 380 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 hCG_2039718K7EN88 272 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 AP3D1O14617 1153 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 ADAMDEC1O15204 470 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 FBXO45P0C2W1 286 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 CYP4B1P13584 511 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 GCKP35557 465 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 OR1E2P47887 323 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 ID4P47928 161 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 SSR4P51571 173 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 RGS8P57771 180 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-209ENST00000597423 SESN3P58005 492 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 MLF1P58340 268 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 CLN3Q13286 438 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 FGFBP1Q14512 234 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 MAPK14Q16539 360 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 MEP1AQ16819 746 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 OR2T5Q6IEZ7 315 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 H3F3CQ6NXT2 135 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 ZNF836Q6ZNA1 936 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 RANBP3LQ86VV4 465 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-209ENST00000597423 GRAMD2AQ8IUY3 354 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms