RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 POLR1BQ9H9Y6 1135 aa8.63□□□□□ -1.03
SS18-220ENST00000582092 TMEM27Q9HBJ8 222 aa8.63□□□□□ -1.03
SS18-220ENST00000582092 TMEM9Q9P0T7 183 aa8.63□□□□□ -1.03
SS18-220ENST00000582092 RPS6KB2Q9UBS0 482 aa8.63□□□□□ -1.03
SS18-220ENST00000582092 TMEFF2Q9UIK5 374 aaPredicted RBP8.63□□□□□ -1.03
SS18-220ENST00000582092 ERVK-19Q9WJR5 959 aa8.63□□□□□ -1.03
SS18-220ENST00000582092 HEMK1Q9Y5R4 338 aaPredicted RBP8.63□□□□□ -1.03
SS18-220ENST00000582092 IGF2RP11717 2491 aa8.63□□□□□ -1.03
SS18-220ENST00000582092 CCDC187A0A096LP49 1063 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 A0A1W2PRQ8 180 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 PRAMEF27A3QJZ7 478 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 CPSF4LA6NMK7 179 aaKnown RBP8.62□□□□□ -1.03
SS18-220ENST00000582092 TMEM229AB2RXF0 380 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 PTGES3LE9PB15 166 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 AGRPO00253 132 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 FCMRO60667 390 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 CYP7B1O75881 506 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 NKX2-2O95096 273 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 ADAP00813 363 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 GASTP01350 101 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 HEXBP07686 556 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 CT62P0C5K7 136 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 ANKRD34CP0C6C1 535 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 ELAVL4P26378 380 aaKnown RBP8.62□□□□□ -1.03
SS18-220ENST00000582092 ELK4P28324 431 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 SSTR4P31391 388 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 CSF2RBP32927 897 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 PIGAP37287 484 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 IDH2P48735 452 aaKnown RBP8.62□□□□□ -1.03
SS18-220ENST00000582092 CRISP1P54107 249 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 SH3BGRP55822 239 aaPredicted RBP8.62□□□□□ -1.03
SS18-220ENST00000582092 CLDN6P56747 220 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 GABARAPL2P60520 117 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 SNRPNP63162 240 aaKnown RBP8.62□□□□□ -1.03
SS18-220ENST00000582092 IGLV3-21P80748 117 aaPredicted RBP8.62□□□□□ -1.03
SS18-220ENST00000582092 ALDH6A1Q02252 535 aaKnown RBP8.62□□□□□ -1.03
SS18-220ENST00000582092 CD47Q08722 323 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 MGAT2Q10469 447 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 COX10Q12887 443 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 RAPSNQ13702 412 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 DGCR6Q14129 220 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 NSDHLQ15738 373 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 IQCCQ4KMZ1 466 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 C3orf38Q5JPI3 329 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 CCNJQ5T5M9 372 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 ANKRD34AQ69YU3 496 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 TYW3Q6IPR3 259 aaKnown RBP8.62□□□□□ -1.03
SS18-220ENST00000582092 TCTN3Q6NUS6 607 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 CASP12Q6UXS9 341 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 FRRS1Q6ZNA5 592 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 QSOX2Q6ZRP7 698 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 SATL1Q86VE3 508 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 MARCH9Q86YJ5 346 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 PRSS58Q8IYP2 241 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 ARHGEF39Q8N4T4 335 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 ZNF527Q8NB42 609 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 TOR1AIP2Q8NFQ8 470 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 OR4C15Q8NGM1 316 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 OR6T1Q8NGN1 323 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 PIGXQ8TBF5 258 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 FAM81AQ8TBF8 368 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 GNPDA2Q8TDQ7 276 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 CTHRC1Q96CG8 243 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 DGCR14Q96DF8 476 aaKnown RBP8.62□□□□□ -1.03
SS18-220ENST00000582092 Q96MT0 163 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 DCBLD2Q96PD2 775 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 OR6C1Q96RD1 312 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 ARHGDIGQ99819 225 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 PSD2Q9BQI7 771 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 ZNF559Q9BR84 538 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 LMF2Q9BU23 707 aaKnown RBP8.62□□□□□ -1.03
SS18-220ENST00000582092 GABARAPL3Q9BY60 117 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 PRRG3Q9BZD7 231 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 ZNF350Q9GZX5 532 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 HOXD1Q9GZZ0 328 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 CCNB1IP1Q9NPC3 277 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 NECTIN3Q9NQS3 549 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 CTPS2Q9NRF8 586 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 RASSF1Q9NS23 344 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 C14orf105Q9NVL8 296 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 CLN6Q9NWW5 311 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 SEMA5BQ9P283 1151 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 GPN3Q9UHW5 284 aaPredicted RBP8.62□□□□□ -1.03
SS18-220ENST00000582092 KCND3Q9UK17 655 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 MKL2Q9ULH7 1088 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 PCDHGB5Q9Y5G0 923 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 PCDHGA8Q9Y5G5 932 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 SCN2AQ99250 2005 aa8.62□□□□□ -1.03
SS18-220ENST00000582092 TRBV4-1A0A0J9YWV2 114 aa8.61□□□□□ -1.03
SS18-220ENST00000582092 IGHV5-10-1A0A0J9YXX1 117 aa8.61□□□□□ -1.03
SS18-220ENST00000582092 GXYLT2A0PJZ3 443 aa8.61□□□□□ -1.03
SS18-220ENST00000582092 SH3PXD2BA1X283 911 aa8.61□□□□□ -1.03
SS18-220ENST00000582092 AGAP5A6NIR3 686 aa8.61□□□□□ -1.03
SS18-220ENST00000582092 D6RAR5 112 aa8.61□□□□□ -1.03
SS18-220ENST00000582092 NTN3O00634 580 aaPredicted RBP8.61□□□□□ -1.03
SS18-220ENST00000582092 POLR1CO15160 346 aaPredicted RBP8.61□□□□□ -1.03
SS18-220ENST00000582092 BRINP1O60477 761 aa8.61□□□□□ -1.03
SS18-220ENST00000582092 SCRG1O75711 98 aa8.61□□□□□ -1.03
SS18-220ENST00000582092 DXOO77932 396 aaKnown RBP8.61□□□□□ -1.03
SS18-220ENST00000582092 KCNK2O95069 426 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms