RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 LIN52Q52LA3 116 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 RNF220Q5VTB9 566 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 DND1Q8IYX4 353 aaKnown RBP14.85□□□□□ -0.03
SS18-211ENST00000578954 PRR22Q8IZ63 422 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 SMYD1Q8NB12 490 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 BRIX1Q8TDN6 353 aaKnown RBP14.85□□□□□ -0.03
SS18-211ENST00000578954 LZICQ8WZA0 190 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 HGDQ93099 445 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 NAF1Q96HR8 494 aaKnown RBP14.85□□□□□ -0.03
SS18-211ENST00000578954 THOC3Q96J01 351 aaKnown RBP14.85□□□□□ -0.03
SS18-211ENST00000578954 HSH2DQ96JZ2 352 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 ADOQ96SZ5 270 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 LHPPQ9H008 270 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 S100A14Q9HCY8 104 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 UBQLN4Q9NRR5 601 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 ARMC1Q9NVT9 282 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 POLHQ9Y253 713 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 ZNF443Q9Y2A4 671 aaPredicted RBP14.85□□□□□ -0.03
SS18-211ENST00000578954 CHST2Q9Y4C5 530 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 NPIPA5A0A0B4J1W7 369 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 A0A1W2PQD3 144 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 NPIPA7E9PJI5 369 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 H3BNX3 289 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 CDK2AP1O14519 115 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 MAN1A2O60476 641 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 TPST1O60507 370 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 UGT2B11O75310 529 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 UTS2O95399 124 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 LGI1O95970 557 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 FESP07332 822 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 NPIPA8P0DM63 369 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 TBXA2RP21731 343 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 ADH7P40394 386 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 EIF2S3P41091 472 aaKnown RBP14.84□□□□□ -0.03
SS18-211ENST00000578954 RFX3P48380 749 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 FGFBP1Q14512 234 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 LARS2Q15031 903 aaKnown RBP14.84□□□□□ -0.03
SS18-211ENST00000578954 NTRK2Q16620 822 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 MEP1AQ16819 746 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 ZSWIM7Q19AV6 140 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 ZNF791Q3KP31 576 aaPredicted RBP14.84□□□□□ -0.03
SS18-211ENST00000578954 GRAMD1BQ3KR37 738 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 FAM98BQ52LJ0 330 aaKnown RBP14.84□□□□□ -0.03
SS18-211ENST00000578954 IFI44LQ53G44 452 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 KLHL26Q53HC5 615 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 ZNF311Q5JNZ3 666 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 OPN5Q6U736 354 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 NUP54Q7Z3B4 507 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 VTCN1Q7Z7D3 282 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 VRK2Q86Y07 508 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 CMIPQ8IY22 773 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 CLEC1AQ8NC01 280 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 OR4C3Q8NH37 302 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 GEMIN6Q8WXD5 167 aaKnown RBP14.84□□□□□ -0.03
SS18-211ENST00000578954 TTC9Q92623 222 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 STMN2Q93045 179 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 SPACA9Q96E40 222 aaPredicted RBP14.84□□□□□ -0.03
SS18-211ENST00000578954 SLC47A1Q96FL8 570 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 ZNF354BQ96LW1 612 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 CDCP1Q9H5V8 836 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 EVA1AQ9H8M9 152 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 CACYBPQ9HB71 228 aaKnown RBP14.84□□□□□ -0.03
SS18-211ENST00000578954 MED13Q9UHV7 2174 aa14.84□□□□□ -0.03
SS18-211ENST00000578954 ADAM10O14672 748 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 HS6ST1O60243 411 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 FADS1O60427 444 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 ICOSLGO75144 302 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 KRT36O76013 467 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 OXSR1O95747 527 aaPredicted RBP14.83□□□□□ -0.04
SS18-211ENST00000578954 RAP2AP10114 183 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 PRKAR1AP10644 381 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 SSR4P51571 173 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 PLAURQ03405 335 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 CHRNB3Q05901 458 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 NRF1Q16656 503 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 IQCCQ4KMZ1 466 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 EIPR1Q53HC9 387 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 ACER2Q5QJU3 275 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 PDZK1Q5T2W1 519 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 FNDC7Q5VTL7 733 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 TMEM81Q6P7N7 255 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 ZNF836Q6ZNA1 936 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 COMTD1Q86VU5 262 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 GRAMD2AQ8IUY3 354 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 SPACA3Q8IXA5 215 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 PYDC1Q8WXC3 89 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 SLC35B4Q969S0 331 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 C7orf34Q96L11 122 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 ARHGDIGQ99819 225 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 IL1RAPQ9NPH3 570 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.83□□□□□ -0.04
SS18-211ENST00000578954 FLRT3Q9NZU0 649 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 ABCG2Q9UNQ0 655 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 ZNF232Q9UNY5 417 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 DTNAQ9Y4J8 743 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 V9GYQ6 96 aa14.83□□□□□ -0.04
SS18-211ENST00000578954 NCOR2Q9Y618 2525 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 CDHR4A6H8M9 788 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 PRAMEF25A6NGN4 478 aa14.82□□□□□ -0.04
SS18-211ENST00000578954 SERINC4A6NH21 518 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms