RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ZNF433Q8N7K0 673 aaPredicted RBP14.1□□□□□ -0.15
VPS53-218ENST00000575207 DNAJC7Q99615 494 aa14.1□□□□□ -0.15
VPS53-218ENST00000575207 EGFL8Q99944 293 aa14.1□□□□□ -0.15
VPS53-218ENST00000575207 TSPY26PQ9H489 355 aa14.1□□□□□ -0.15
VPS53-218ENST00000575207 PLK3Q9H4B4 646 aa14.1□□□□□ -0.15
VPS53-218ENST00000575207 BCAP29Q9UHQ4 241 aa14.1□□□□□ -0.15
VPS53-218ENST00000575207 ZDHHC2Q9UIJ5 367 aa14.1□□□□□ -0.15
VPS53-218ENST00000575207 FBXO9Q9UK97 447 aaPredicted RBP14.1□□□□□ -0.15
VPS53-218ENST00000575207 FBXO5Q9UKT4 447 aa14.1□□□□□ -0.15
VPS53-218ENST00000575207 ASB4Q9Y574 426 aa14.1□□□□□ -0.15
VPS53-218ENST00000575207 A0A0J9YW62 118 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 A0A1W2PR48 441 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 TCRBV7S2A1N4TA0A589 114 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 SHISA8B8ZZ34 492 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 J3QLI3 93 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 TNFSF11O14788 317 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 TSPAN15O95858 294 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 TGFB1P01137 390 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 NT5EP21589 574 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 CASP2P42575 452 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 CHRNEQ04844 493 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 ZP4Q12836 540 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 OASLQ15646 514 aaKnown RBP14.09□□□□□ -0.15
VPS53-218ENST00000575207 ZNF239Q16600 458 aaKnown RBP14.09□□□□□ -0.15
VPS53-218ENST00000575207 SH2D4BQ5SQS7 431 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 ANKRD22Q5VYY1 191 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 SAXO2Q658L1 398 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 MRM1Q6IN84 353 aaKnown RBP14.09□□□□□ -0.15
VPS53-218ENST00000575207 FAM111BQ6SJ93 734 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 LMNTD2Q8IXW0 634 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 CCDC89Q8N998 374 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 UBASH3BQ8TF42 649 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 OSTF1Q92882 214 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 ZNF669Q96BR6 464 aaPredicted RBP14.09□□□□□ -0.15
VPS53-218ENST00000575207 WDR34Q96EX3 536 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 BPIFA3Q9BQP9 254 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 WDR41Q9HAD4 459 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 ZNF639Q9UID6 485 aa14.09□□□□□ -0.15
VPS53-218ENST00000575207 GPR55Q9Y2T6 319 aaPredicted RBP14.09□□□□□ -0.15
VPS53-218ENST00000575207 ATP6V1G2-DDX39BF2Z307 99 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 CLGNO14967 610 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 PIK3R1P27986 724 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 PNLIPRP2P54317 469 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 RAC1P63000 192 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 BASP1P80723 227 aaKnown RBP14.08□□□□□ -0.16
VPS53-218ENST00000575207 MGAT2Q10469 447 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 EFNB3Q15768 340 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 C18orf21Q32NC0 220 aaPredicted RBP14.08□□□□□ -0.16
VPS53-218ENST00000575207 LGSNQ5TDP6 509 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 KHDRBS2Q5VWX1 349 aaKnown RBP14.08□□□□□ -0.16
VPS53-218ENST00000575207 ARMC3Q5W041 872 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 HBMQ6B0K9 141 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 KIR3DL3Q8N743 410 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 CEP112Q8N8E3 955 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 CALML6Q8TD86 181 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 GTF3AQ92664 365 aaKnown RBP14.08□□□□□ -0.16
VPS53-218ENST00000575207 PTCD3Q96EY7 689 aaKnown RBP14.08□□□□□ -0.16
VPS53-218ENST00000575207 SERPINB12Q96P63 405 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 EFCAB11Q9BUY7 163 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 LYARQ9NX58 379 aaKnown RBP14.08□□□□□ -0.16
VPS53-218ENST00000575207 NTMQ9P121 344 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 HERC2O95714 4834 aa14.08□□□□□ -0.16
VPS53-218ENST00000575207 A0A0G2JMP0 313 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 A0A0X1KG70 313 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 GOLGA6L10A6NI86 522 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 GOLGA6L19H0YKK7 550 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 LIASO43766 372 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 SCO2O43819 266 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 ZSCAN5DPP0CG00 497 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 OMGP23515 440 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 EVI2BP34910 448 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 KRT20P35900 424 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 RAP1GDS1P52306 607 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 LMO4P61968 165 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 CDKL1Q00532 357 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 DUSP2Q05923 314 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 BAMBIQ13145 260 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 PDAP1Q13442 181 aaKnown RBP14.07□□□□□ -0.16
VPS53-218ENST00000575207 EXOSC7Q15024 291 aaKnown RBP14.07□□□□□ -0.16
VPS53-218ENST00000575207 HIST2H2ACQ16777 129 aaPredicted RBP14.07□□□□□ -0.16
VPS53-218ENST00000575207 PAGE2BQ5JRK9 111 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 PDSS1Q5T2R2 415 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 RBM20Q5T481 1227 aaKnown RBP14.07□□□□□ -0.16
VPS53-218ENST00000575207 HIST2H2AA3Q6FI13 130 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 OR52E8Q6IFG1 317 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 CCBE1Q6UXH8 406 aaPredicted RBP14.07□□□□□ -0.16
VPS53-218ENST00000575207 LARP4Q71RC2 724 aaKnown RBP eCLIP14.07□□□□□ -0.16
VPS53-218ENST00000575207 OR4M2Q8NGB6 313 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 REXO5Q96IC2 774 aaKnown RBP14.07□□□□□ -0.16
VPS53-218ENST00000575207 OR51B5Q9H339 312 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 BEX1Q9HBH7 125 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 SDHAF3Q9NRP4 125 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 MID2Q9UJV3 735 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 PLLPQ9Y342 182 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 TRAF6Q9Y4K3 522 aa14.07□□□□□ -0.16
VPS53-218ENST00000575207 RAD51DO75771 328 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 PRKD3O94806 890 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 OPN1LWP04000 364 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 ERCC1P07992 297 aaPredicted RBP14.06□□□□□ -0.16
VPS53-218ENST00000575207 EDNRAP25101 427 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms