RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 OR2T11Q8NH01 316 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 FNDC9Q8TBE3 224 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 GPR151Q8TDV0 419 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 ZNF845Q96IR2 970 aaPredicted RBP14.48□□□□□ -0.09
CLN3-229ENST00000567963 FCRL1Q96LA6 429 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 WFIKKN1Q96NZ8 548 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 FAM111AQ96PZ2 611 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 OPN3Q9H1Y3 402 aaPredicted RBP14.48□□□□□ -0.09
CLN3-229ENST00000567963 REEP4Q9H6H4 257 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 EQTNQ9NQ60 294 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 EIF3LQ9Y262 564 aaKnown RBP14.48□□□□□ -0.09
CLN3-229ENST00000567963 ZNF175Q9Y473 711 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 AP4B1Q9Y6B7 739 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 SMIM23A6NLE4 172 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 AZIN1O14977 448 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 EMC8O43402 210 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 TBX19O60806 448 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 NKX2-2O95096 273 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 FRKP42685 505 aaPredicted RBP14.47□□□□□ -0.09
CLN3-229ENST00000567963 SLC18A2Q05940 514 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 TMEM44Q2T9K0 475 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 VPS26BQ4G0F5 336 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 RFTN2Q52LD8 501 aaPredicted RBP14.47□□□□□ -0.09
CLN3-229ENST00000567963 ZNF385BQ569K4 471 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 RNF165Q6ZSG1 346 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 EXOC3L1Q86VI1 746 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 METTL25Q8N6Q8 603 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 LRRN4CLQ8ND94 238 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 WFDC11Q8NEX6 87 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 CEP70Q8NHQ1 597 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 EPS8L3Q8TE67 593 aaKnown RBP14.47□□□□□ -0.09
CLN3-229ENST00000567963 GIMAP5Q96F15 307 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 ZBED6CLQ96FA7 236 aaPredicted RBP14.47□□□□□ -0.09
CLN3-229ENST00000567963 CCT7Q99832 543 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 IQCGQ9H095 443 aaKnown RBP14.47□□□□□ -0.09
CLN3-229ENST00000567963 TUBB1Q9H4B7 451 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 GSX1Q9H4S2 264 aaPredicted RBP14.47□□□□□ -0.09
CLN3-229ENST00000567963 NEUROD4Q9HD90 331 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 KLHL28Q9NXS3 571 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 ELOVL5Q9NYP7 299 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 NTMQ9P121 344 aa14.47□□□□□ -0.09
CLN3-229ENST00000567963 CTIFO43310 598 aaKnown RBP14.46□□□□□ -0.09
CLN3-229ENST00000567963 AKAP10O43572 662 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 GMFGO60234 142 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 LINC00032P0C843 101 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 CD8BP10966 210 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 SDC1P18827 310 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 UGT2B10P36537 528 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 PRKAG1P54619 331 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 MANFP55145 182 aaKnown RBP14.46□□□□□ -0.09
CLN3-229ENST00000567963 RPS3AP61247 264 aaKnown RBP14.46□□□□□ -0.09
CLN3-229ENST00000567963 SIRPAP78324 504 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 PCLAFQ15004 111 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 GUSBP1Q15486 140 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 C4orf33Q8N1A6 199 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 CDRT4Q8N9R6 151 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 NUP43Q8NFH3 380 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 OR4C3Q8NH37 302 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 ZFP28Q8NHY6 868 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 PPCDCQ96CD2 204 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 TSSK3Q96PN8 268 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 SLC39A3Q9BRY0 314 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 TRMOQ9BU70 441 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 GATA5Q9BWX5 397 aaPredicted RBP14.46□□□□□ -0.09
CLN3-229ENST00000567963 BEX4Q9NWD9 120 aaPredicted RBP14.46□□□□□ -0.09
CLN3-229ENST00000567963 ZNF226Q9NYT6 803 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 C6orf203Q9P0P8 240 aaPredicted RBP14.46□□□□□ -0.09
CLN3-229ENST00000567963 SH3BP4Q9P0V3 963 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 BAIAP2L1Q9UHR4 511 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 FIS1Q9Y3D6 152 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 DNAJC15Q9Y5T4 150 aa14.46□□□□□ -0.09
CLN3-229ENST00000567963 FLNAP21333 2647 aaKnown RBP14.46□□□□□ -0.09
CLN3-229ENST00000567963 DEFB108AA8MXU0 73 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 SHISA8B8ZZ34 492 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 ALG1L2C9J202 215 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 LSM1O15116 133 aaKnown RBP14.45□□□□□ -0.1
CLN3-229ENST00000567963 SIAH2O43255 324 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 TRIM13O60858 407 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 NEFHP12036 1026 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 POU2F1P14859 743 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 HOXB4P17483 251 aaPredicted RBP14.45□□□□□ -0.1
CLN3-229ENST00000567963 PDE7AQ13946 482 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 FGFBP1Q14512 234 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 SGCBQ16585 318 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 KANK2Q63ZY3 851 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 GALNT10Q86SR1 603 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 GGNQ86UU5 652 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 ZNF610Q8N9Z0 462 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 SLC16A11Q8NCK7 471 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 FAM110BQ8TC76 370 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 SLC9A6Q92581 669 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 MED18Q9BUE0 208 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 ACSS1Q9NUB1 689 aaPredicted RBP14.45□□□□□ -0.1
CLN3-229ENST00000567963 STOML1Q9UBI4 398 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 MID2Q9UJV3 735 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 VDAC3Q9Y277 283 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 TMED5Q9Y3A6 229 aa14.45□□□□□ -0.1
CLN3-229ENST00000567963 C16orf97H3BN30 126 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 NDUFB5O43674 189 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 111.7 ms