RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 IFNGP01579 166 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 CDK1P06493 297 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 UBL4AP11441 157 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 NAGAP17050 411 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 MYL12AP19105 171 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 PAICSP22234 425 aaKnown RBP6.98□□□□□ -1.29
VPS39-204ENST00000561818 FKBP2P26885 142 aaKnown RBP6.98□□□□□ -1.29
VPS39-204ENST00000561818 MAOBP27338 520 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 ELK4P28324 431 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 CSTF2P33240 577 aaKnown RBP eCLIP6.98□□□□□ -1.29
VPS39-204ENST00000561818 GCGRP47871 477 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 GSSP48637 474 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 PCYT1AP49585 367 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 PDX1P52945 283 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 SUMO3P55854 103 aaPredicted RBP6.98□□□□□ -1.29
VPS39-204ENST00000561818 CTBP2P56545 445 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 DAB2P98082 770 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 RAB40BQ12829 278 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 POU4F2Q12837 409 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 FGFBP1Q14512 234 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 GANABQ14697 944 aaKnown RBP6.98□□□□□ -1.29
VPS39-204ENST00000561818 RAB39AQ14964 217 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 NCF4Q15080 339 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 SEC23BQ15437 767 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 GPR68Q15743 365 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 MEP1AQ16819 746 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 TRMT12Q53H54 448 aaKnown RBP6.98□□□□□ -1.29
VPS39-204ENST00000561818 MRPL2Q5T653 305 aaKnown RBP6.98□□□□□ -1.29
VPS39-204ENST00000561818 UBE2UQ5VVX9 321 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 PODNL1Q6PEZ8 512 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 B3GNT8Q7Z7M8 397 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 MRGPREQ86SM8 312 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 PPP1R3BQ86XI6 285 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 ANKRD13BQ86YJ7 626 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 CLVS1Q8IUQ0 354 aaPredicted RBP6.98□□□□□ -1.29
VPS39-204ENST00000561818 ENTHD1Q8IYW4 607 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 HS3ST5Q8IZT8 346 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 OR5L2Q8NGL0 311 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 BRIX1Q8TDN6 353 aaKnown RBP6.98□□□□□ -1.29
VPS39-204ENST00000561818 METTL21AQ8WXB1 218 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 GTPBP3Q969Y2 492 aaKnown RBP6.98□□□□□ -1.29
VPS39-204ENST00000561818 CCDC74AQ96AQ1 378 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 NACC2Q96BF6 587 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 ISOC1Q96CN7 298 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 C16orf58Q96GQ5 468 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 PTCHD1Q96NR3 888 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 COQ7Q99807 217 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 MND1Q9BWT6 205 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 ITPAQ9BY32 194 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 YIPF3Q9GZM5 350 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 CCDC90BQ9GZT6 254 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 KLHL25Q9H0H3 589 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 SLC26A1Q9H2B4 701 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 SYNDIG1Q9H7V2 258 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 WDR54Q9H977 334 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 PALMDQ9NP74 551 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 ISYNA1Q9NPH2 558 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 C2orf42Q9NWW7 574 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 IL20Q9NYY1 176 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 HCN3Q9P1Z3 774 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 FTSJ1Q9UET6 329 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 WARS2Q9UGM6 360 aaKnown RBP6.98□□□□□ -1.29
VPS39-204ENST00000561818 MKLN1Q9UL63 735 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 MAGED1Q9Y5V3 778 aaPredicted RBP6.98□□□□□ -1.29
VPS39-204ENST00000561818 CEPT1Q9Y6K0 416 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 CDH10Q9Y6N8 788 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 CACNA1EQ15878 2313 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 SNRNP200O75643 2136 aaKnown RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 TRBV4-1A0A0J9YWV2 114 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 TRIM64BA6NI03 449 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 C17orf105B2RV13 164 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 PTGES3LE9PB15 166 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 H3BMH7 237 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 M0R3H8 397 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 CDK2AP1O14519 115 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 ARHGAP33O14559 1287 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 PRODHO43272 600 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 IDH3BO43837 385 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 EIF4E2O60573 245 aaKnown RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 SDC3O75056 442 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 CPNE3O75131 537 aaKnown RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 GABARAPO95166 117 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 IL33O95760 270 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 CLIC3O95833 236 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 FADS2O95864 444 aaKnown RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 GASTP01350 101 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 IGHEP01854 428 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 STATHP02808 62 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 CFIP05156 583 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 KLK3P07288 261 aaPredicted RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 CYP4B1P13584 511 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 ALAS2P22557 587 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 IL12BP29460 328 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 GRK5P34947 590 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 HTR3AP46098 478 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 GIPRP48546 466 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 CENPAP49450 140 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 EMDP50402 254 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 CASP9P55211 416 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 GFERP55789 205 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms