RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 RFX3P48380 749 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 RPS26P62854 115 aaKnown RBP8.54□□□□□ -1.04
LDLR-211ENST00000560173 SLC10A1Q14973 349 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 GRAMD1BQ3KR37 738 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 TIGD2Q4W5G0 525 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 FIGNL1Q6PIW4 674 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 PAOXQ6QHF9 649 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 MSANTD1Q6ZTZ1 278 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 C6orf120Q7Z4R8 191 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 ZAR1Q86SH2 424 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 GALNT10Q86SR1 603 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 FITM2Q8N6M3 262 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 WDSUB1Q8N9V3 476 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 OR1J4Q8NGS1 313 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 GOT1L1Q8NHS2 421 aaPredicted RBP8.54□□□□□ -1.04
LDLR-211ENST00000560173 RFWD2Q8NHY2 731 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 FAM57AQ8TBR7 257 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 MIPOL1Q8TD10 442 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 ADAMTS15Q8TE58 950 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 CDS1Q92903 461 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 THOC1Q96FV9 657 aaKnown RBP8.54□□□□□ -1.04
LDLR-211ENST00000560173 SLC35G5Q96KT7 338 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 GNRHR2Q96P88 292 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 OR52E6Q96RD3 313 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 INPP5KQ9BT40 448 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 SLC6A15Q9H2J7 730 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 RASSF4Q9H2L5 321 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 ACKR4Q9NPB9 350 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 SERHLQ9NQF3 203 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 TINAGQ9UJW2 476 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 PCDHGB4Q9UN71 923 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 CENPEQ02224 2701 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 MED12Q93074 2177 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 NCKAP5O14513 1909 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 CELSR2Q9HCU4 2923 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 TRGV5A0A0B4J1U4 118 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 FAM234BA2RU67 622 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 OR14I1A6ND48 311 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 WIPF3A6NGB9 483 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 CCDC154A6NI56 674 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 C17orf51A8MQB3 221 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 AQP7O14520 342 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 PRRG2O14669 202 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 SUSD5O60279 629 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 SOX30O94993 753 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 HPNP05981 417 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 NGFRP08138 427 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 CALB2P22676 271 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 LCN1P31025 176 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 CDKN2CP42773 168 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 ATP4BP51164 291 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 POLR2JP52435 117 aaKnown RBP8.53□□□□□ -1.04
LDLR-211ENST00000560173 CASP6P55212 293 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 STX1BP61266 288 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 POU6F2P78424 691 aaPredicted RBP8.53□□□□□ -1.04
LDLR-211ENST00000560173 LRRC74AQ0VAA2 488 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 EMC4Q5J8M3 183 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 CCNJQ5T5M9 372 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 SAXO2Q658L1 398 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 APOOLQ6UXV4 268 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 MTDHQ86UE4 582 aaKnown RBP8.53□□□□□ -1.04
LDLR-211ENST00000560173 CD163Q86VB7 1156 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 FJX1Q86VR8 437 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 DOLPP1Q86YN1 238 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 PLCZ1Q86YW0 608 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 ARHGAP24Q8N264 748 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 OR5D16Q8NGK9 328 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 SSC4DQ8WTU2 575 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 NEURL3Q96EH8 262 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 OR7D2Q96RA2 312 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 PANX1Q96RD7 426 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 G6PC3Q9BUM1 346 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 RTN4RQ9BZR6 473 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 OR2B2Q9GZK3 357 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 MYLK2Q9H1R3 596 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 FBXO34Q9NWN3 711 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 SPRR3Q9UBC9 169 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 SH3BGRL2Q9UJC5 107 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 FBXL2Q9UKC9 423 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 KCNE3Q9Y6H6 103 aa8.53□□□□□ -1.04
LDLR-211ENST00000560173 CACNA1DQ01668 2161 aa8.52□□□□□ -1.04
LDLR-211ENST00000560173 IGLV3-32A0A0A0MS00 114 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 ALG1L2C9J202 215 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 NPIPA2E9PIF3 369 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 NPIPA3F8WFD2 350 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 CCL21O00585 134 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 BCKDKO14874 412 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 CBR3O75828 277 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 TRAPPC6AO75865 159 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 OXSR1O95747 527 aaPredicted RBP8.52□□□□□ -1.05
LDLR-211ENST00000560173 C1QCP02747 245 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 GSNP06396 782 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 TPOP07202 933 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 MATN1P21941 496 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 CHI3L1P36222 383 aaPredicted RBP8.52□□□□□ -1.05
LDLR-211ENST00000560173 TRPC1P48995 793 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 PER3P56645 1201 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 STX5Q13190 355 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 RCAN2Q14206 197 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 SQLEQ14534 574 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 181.8 ms