RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 TBXA2RP21731 343 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 ASCL1P50553 236 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 ZNF136P52737 540 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 CLDN18P56856 261 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 DUSP5Q16690 384 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 TMEM44Q2T9K0 475 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 GRAMD1BQ3KR37 738 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 OGFOD2Q6N063 350 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 CDC73Q6P1J9 531 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 MISPQ8IVT2 679 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 RELL2Q8NC24 303 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 OR8J2Q8NGG1 315 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 RAB3IL1Q8TBN0 382 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 PIK3R3Q92569 461 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 WNT2BQ93097 391 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 C1GALT1C1Q96EU7 318 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 LURAP1Q96LR2 239 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 SFXN2Q96NB2 322 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 TM9SF2Q99805 663 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 SH3GL2Q99962 352 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 G6PC3Q9BUM1 346 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 BTBD2Q9BX70 525 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 TBL1XR1Q9BZK7 514 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 RTN4RQ9BZR6 473 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 PIGUQ9H490 435 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 MCCC2Q9HCC0 563 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 ZCCHC3Q9NUD5 404 aaKnown RBP14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 WDR91A4D1P6 747 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 C7orf72A4D263 438 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 KDM4EB2RXH2 506 aaPredicted RBP14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 SYT5O00445 386 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 HMGN2P05204 90 aaKnown RBP14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 ALOX5P09917 674 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 BGNP21810 368 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 PRKAG1P54619 331 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 EEF1A1P68104 462 aaKnown RBP14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 STX3Q13277 289 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 BEND6Q5SZJ8 279 aaPredicted RBP14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 EEF1A1P5Q5VTE0 462 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 OR5M10Q6IEU7 315 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 BHLHB9Q6PI77 547 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 APOOLQ6UXV4 268 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 KRTCAP2Q8N6L1 136 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 SLC9A6Q92581 669 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 TESCQ96BS2 214 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 LRRC46Q96FV0 321 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 TRIB1Q96RU8 372 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 TUBA1CQ9BQE3 449 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 DUSP26Q9BV47 211 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 ACTRT3Q9BYD9 372 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 ACBD3Q9H3P7 528 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 CENPHQ9H3R5 247 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 DSN1Q9H410 356 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 CXorf36Q9H7Y0 433 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 ZNF395Q9H8N7 513 aaPredicted RBP14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 AKTIPQ9H8T0 292 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 MEAF6Q9HAF1 191 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 UBQLN4Q9NRR5 601 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 GPATCH2Q9NW75 528 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 JKAMPQ9P055 326 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 L3MBTL1Q9Y468 752 aa14.53□□□□□ -0.08
CCDC88C-209ENST00000554872 A0A087WZY1 265 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 TMEM120BA0PK00 339 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 ENO4A6NNW6 628 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 H0Y3Z8 333 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 RNASET2O00584 256 aaKnown RBP14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 ANKRD28O15084 1053 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 SNNO75324 88 aaPredicted RBP14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 RCBTB2O95199 551 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 OXSR1O95747 527 aaPredicted RBP14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 ANGPTL1O95841 491 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 PEPDP12955 493 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 ZNF17P17021 662 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 CTSSP25774 331 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 OPRM1P35372 400 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 CCT3P49368 545 aaKnown RBP14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 DLX5P56178 289 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 WDR4P57081 412 aaKnown RBP14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 BST1Q10588 318 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 PDCD2Q16342 344 aaPredicted RBP14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 DPY19L1Q2PZI1 675 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 COX18Q8N8Q8 333 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 OR4C3Q8NH37 302 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 ACTRT2Q8TDY3 377 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 DUSP19Q8WTR2 217 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 RNASE6Q93091 150 aaKnown RBP14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 TLCD1Q96CP7 247 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 C16orf58Q96GQ5 468 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 SFXN3Q9BWM7 321 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 KCNK9Q9NPC2 374 aa14.52□□□□□ -0.09
CCDC88C-209ENST00000554872 MED12Q93074 2177 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 DOCK7Q96N67 2140 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 CLCA1A8K7I4 914 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 C17orf51A8MQB3 221 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 C6orf47O95873 294 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 CRHP06850 196 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 PCYT1AP49585 367 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 EEFSECP57772 596 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 HBA1P69905 142 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 POU6F2P78424 691 aaPredicted RBP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms