RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 AICDAQ9GZX7 198 aa3.23□□□□□ -1.89
LIMA1-206ENST00000550611 PCBD2Q9H0N5 130 aa3.23□□□□□ -1.89
LIMA1-206ENST00000550611 LIN28AQ9H9Z2 209 aaKnown RBP3.23□□□□□ -1.89
LIMA1-206ENST00000550611 PROK2Q9HC23 129 aa3.23□□□□□ -1.89
LIMA1-206ENST00000550611 SH2D2AQ9NP31 389 aa3.23□□□□□ -1.89
LIMA1-206ENST00000550611 ACKR4Q9NPB9 350 aa3.23□□□□□ -1.89
LIMA1-206ENST00000550611 SEMA4BQ9NPR2 832 aaPredicted RBP3.23□□□□□ -1.89
LIMA1-206ENST00000550611 ZNHIT6Q9NWK9 470 aaKnown RBP3.23□□□□□ -1.89
LIMA1-206ENST00000550611 TRMT1Q9NXH9 659 aaKnown RBP3.23□□□□□ -1.89
LIMA1-206ENST00000550611 SPRR3Q9UBC9 169 aa3.23□□□□□ -1.89
LIMA1-206ENST00000550611 ANAPC5Q9UJX4 755 aa3.23□□□□□ -1.89
LIMA1-206ENST00000550611 PRDM4Q9UKN5 801 aa3.23□□□□□ -1.89
LIMA1-206ENST00000550611 ACAD8Q9UKU7 415 aa3.23□□□□□ -1.89
LIMA1-206ENST00000550611 TFR2Q9UP52 801 aa3.23□□□□□ -1.89
LIMA1-206ENST00000550611 DHRS7Q9Y394 339 aa3.23□□□□□ -1.89
LIMA1-206ENST00000550611 MMACHCQ9Y4U1 282 aa3.23□□□□□ -1.89
LIMA1-206ENST00000550611 ARID1AO14497 2285 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 TRGV5A0A0B4J1U4 118 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 ATP6AP2A0A1C7CYW4 349 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 TRBC2A0A5B9 178 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 MACROD2A1Z1Q3 448 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 TUBAL3A6NHL2 446 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 MBD3L5A6NJ08 208 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-206ENST00000550611 A8MUA0 341 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 A8MVJ9 347 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 BTNL10A8MVZ5 291 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 C4orf51C9J302 202 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 G3V3Y1 287 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 M0R3H8 397 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 PSMD9O00233 223 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 SLC16A5O15375 505 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 ARHGEF9O43307 516 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 LIASO43766 372 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 ZBTB14O43829 449 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 CEP104O60308 925 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 ATP6AP2O75787 350 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 OR2J2O76002 312 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 MYO1DO94832 1006 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 GAS8-AS1O95177 125 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 VAPBO95292 243 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 MBD3O95983 291 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 GAS8O95995 478 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 FESP07332 822 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 RFPL3SP0C7P2 107 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 SLC35G6P0C7Q6 338 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 DHRS4L1P0CG22 281 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 RNH1P13489 461 aaKnown RBP3.22□□□□□ -1.89
LIMA1-206ENST00000550611 ENO3P13929 434 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-206ENST00000550611 ETS1P14921 441 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 PAX1P15863 534 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 PPP2R1BP30154 601 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 SOX3P41225 446 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 NPY2RP49146 381 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 ZNF136P52737 540 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 NR1H2P55055 460 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 OLR1P78380 273 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 CRADDP78560 199 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 PLGLB1Q02325 96 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 TSTA3Q13630 321 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-206ENST00000550611 RUNX2Q13950 521 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 RPS6KA2Q15349 733 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 ZNF791Q3KP31 576 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-206ENST00000550611 ACSF3Q4G176 576 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-206ENST00000550611 DEFB134Q4QY38 66 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 PIGGQ5H8A4 983 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 NSUN5P2Q63ZY6 315 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 ABLIM2Q6H8Q1 611 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 LIN54Q6MZP7 749 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 AGTRAPQ6RW13 159 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 LCTLQ6UWM7 567 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 IL20RBQ6UXL0 311 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 PPP1R21Q6ZMI0 780 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 PIWIL4Q7Z3Z4 852 aaKnown RBP3.22□□□□□ -1.89
LIMA1-206ENST00000550611 MAATS1Q7Z4T9 603 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 SDCCAG8Q86SQ7 713 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-206ENST00000550611 PRUNE1Q86TP1 453 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 CAND1Q86VP6 1230 aaKnown RBP3.22□□□□□ -1.89
LIMA1-206ENST00000550611 C17orf64Q86WR6 236 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 HIPK1Q86Z02 1210 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 P3H2Q8IVL5 708 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 VSTM4Q8IW00 320 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 CA13Q8N1Q1 262 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 LRRC25Q8N386 305 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-206ENST00000550611 FBXW8Q8N3Y1 598 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 PPHLN1Q8NEY8 458 aaKnown RBP3.22□□□□□ -1.89
LIMA1-206ENST00000550611 OR8K3Q8NH51 312 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 NEIL3Q8TAT5 605 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 PAQR8Q8TEZ7 354 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 PTPMT1Q8WUK0 201 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-206ENST00000550611 SMPDL3BQ92485 455 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 KCNJ9Q92806 393 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 NCLNQ969V3 563 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 VMP1Q96GC9 406 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 DACH2Q96NX9 599 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 OR4K3Q96R72 315 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 SNX18Q96RF0 628 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 WDR83Q9BRX9 315 aaKnown RBP3.22□□□□□ -1.89
LIMA1-206ENST00000550611 TMEM120AQ9BXJ8 343 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 IL22Q9GZX6 179 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 SPNS1Q9H2V7 528 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms