RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 IGHV4-39P01824 125 aa15.11■□□□□ 0.01
VPS29-204ENST00000548259 ADH6P28332 368 aa15.11■□□□□ 0.01
VPS29-204ENST00000548259 PSG6Q00889 435 aa15.11■□□□□ 0.01
VPS29-204ENST00000548259 CAV1Q03135 178 aa15.11■□□□□ 0.01
VPS29-204ENST00000548259 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.11■□□□□ 0.01
VPS29-204ENST00000548259 TECRLQ5HYJ1 363 aa15.11■□□□□ 0.01
VPS29-204ENST00000548259 CLEC2AQ6UVW9 174 aa15.11■□□□□ 0.01
VPS29-204ENST00000548259 C11orf24Q96F05 449 aaPredicted RBP15.11■□□□□ 0.01
VPS29-204ENST00000548259 ADAD1Q96M93 576 aaKnown RBP15.11■□□□□ 0.01
VPS29-204ENST00000548259 GRIP2Q9C0E4 1043 aa15.11■□□□□ 0.01
VPS29-204ENST00000548259 VPS11Q9H270 941 aa15.11■□□□□ 0.01
VPS29-204ENST00000548259 C12orf49Q9H741 205 aa15.11■□□□□ 0.01
VPS29-204ENST00000548259 TIGARQ9NQ88 270 aa15.11■□□□□ 0.01
VPS29-204ENST00000548259 FARSBQ9NSD9 589 aaKnown RBP15.11■□□□□ 0.01
VPS29-204ENST00000548259 TMEM160Q9NX00 188 aa15.11■□□□□ 0.01
VPS29-204ENST00000548259 A0A087WV62 115 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 NDUFB5O43674 189 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 PCDH7O60245 1069 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 NME6O75414 186 aaPredicted RBP15.1■□□□□ 0.01
VPS29-204ENST00000548259 KRT6AP02538 564 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 KRT6BP04259 564 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 IL3P08700 152 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 THBS2P35442 1172 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 GSTM5P46439 218 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 RFX3P48380 749 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 KRT6CP48668 564 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 NUDT6P53370 316 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 UAP1Q16222 522 aaPredicted RBP15.1■□□□□ 0.01
VPS29-204ENST00000548259 FIGNL1Q6PIW4 674 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 ESPNLQ6ZVH7 1005 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 SSX8Q7RTT4 187 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 MARCH3Q86UD3 253 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 OR7G2Q8NG99 324 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 OR2V1Q8NHB1 315 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 LILRB1Q8NHL6 650 aaPredicted RBP15.1■□□□□ 0.01
VPS29-204ENST00000548259 KISS1RQ969F8 398 aaPredicted RBP15.1■□□□□ 0.01
VPS29-204ENST00000548259 ZBTB8AQ96BR9 441 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 SHARPINQ9H0F6 387 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 DDX18Q9NVP1 670 aaKnown RBP15.1■□□□□ 0.01
VPS29-204ENST00000548259 VDAC3Q9Y277 283 aa15.1■□□□□ 0.01
VPS29-204ENST00000548259 IGLV3-32A0A0A0MS00 114 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 TTC36A6NLP5 189 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 ADAMDEC1O15204 470 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 CXCL13O43927 109 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 SSX4O60224 188 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 GMFGO60234 142 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 KCNH1O95259 989 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 IL33O95760 270 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 ANGPTL1O95841 491 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 AGTR1P30556 359 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 MAGEA4P43358 317 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 ZNF41P51814 821 aaPredicted RBP15.09■□□□□ 0.01
VPS29-204ENST00000548259 RAC1P63000 192 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 ZNF844Q08AG5 666 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 ACSM2AQ08AH3 577 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 CSTF3Q12996 717 aaKnown RBP15.09■□□□□ 0.01
VPS29-204ENST00000548259 P2RY6Q15077 328 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 RNPS1Q15287 305 aaKnown RBP15.09■□□□□ 0.01
VPS29-204ENST00000548259 TMEM44Q2T9K0 475 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 TSNAXIP1Q2TAA8 658 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 SPIN4Q56A73 249 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 AGAP6Q5VW22 663 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 ACSM2BQ68CK6 577 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 HBMQ6B0K9 141 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 DNM1P46Q6ZS02 220 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 GALNT10Q86SR1 603 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 GTPBP8Q8N3Z3 284 aaPredicted RBP15.09■□□□□ 0.01
VPS29-204ENST00000548259 MRRFQ96E11 262 aaKnown RBP15.09■□□□□ 0.01
VPS29-204ENST00000548259 NSUN5Q96P11 429 aaKnown RBP15.09■□□□□ 0.01
VPS29-204ENST00000548259 GPR78Q96P69 363 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 POTEKPQ9BYX7 375 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 FBXO34Q9NWN3 711 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 HEATR5AQ86XA9 2040 aa15.09■□□□□ 0.01
VPS29-204ENST00000548259 UTS2O95399 124 aa15.08■□□□□ 0
VPS29-204ENST00000548259 CASP9P55211 416 aa15.08■□□□□ 0
VPS29-204ENST00000548259 PRR5P85299 388 aa15.08■□□□□ 0
VPS29-204ENST00000548259 TAB1Q15750 504 aa15.08■□□□□ 0
VPS29-204ENST00000548259 TMEM249Q2WGJ8 235 aa15.08■□□□□ 0
VPS29-204ENST00000548259 TCHHL1Q5QJ38 904 aaPredicted RBP15.08■□□□□ 0
VPS29-204ENST00000548259 SFRP5Q5T4F7 317 aa15.08■□□□□ 0
VPS29-204ENST00000548259 LETMD1Q6P1Q0 360 aa15.08■□□□□ 0
VPS29-204ENST00000548259 MMGT1Q8N4V1 131 aa15.08■□□□□ 0
VPS29-204ENST00000548259 TNFRSF13CQ96RJ3 184 aa15.08■□□□□ 0
VPS29-204ENST00000548259 TRAF4Q9BUZ4 470 aaPredicted RBP15.08■□□□□ 0
VPS29-204ENST00000548259 CISD1Q9NZ45 108 aaKnown RBP15.08■□□□□ 0
VPS29-204ENST00000548259 C19orf53Q9UNZ5 99 aaPredicted RBP15.08■□□□□ 0
VPS29-204ENST00000548259 UTP11Q9Y3A2 253 aaKnown RBP15.08■□□□□ 0
VPS29-204ENST00000548259 ANK3Q12955 4377 aaKnown RBP15.07■□□□□ 0
VPS29-204ENST00000548259 FAM234BA2RU67 622 aa15.07■□□□□ 0
VPS29-204ENST00000548259 SHISA8B8ZZ34 492 aa15.07■□□□□ 0
VPS29-204ENST00000548259 UBFD1O14562 309 aaKnown RBP15.07■□□□□ 0
VPS29-204ENST00000548259 TNFSF11O14788 317 aa15.07■□□□□ 0
VPS29-204ENST00000548259 NTSP30990 170 aa15.07■□□□□ 0
VPS29-204ENST00000548259 NCBP2P52298 156 aaKnown RBP eCLIP15.07■□□□□ 0
VPS29-204ENST00000548259 PLTPP55058 493 aa15.07■□□□□ 0
VPS29-204ENST00000548259 CARD18P57730 90 aa15.07■□□□□ 0
VPS29-204ENST00000548259 BSPH1Q075Z2 132 aa15.07■□□□□ 0
VPS29-204ENST00000548259 PGGHGQ32M88 737 aa15.07■□□□□ 0
VPS29-204ENST00000548259 CPTPQ5TA50 214 aa15.07■□□□□ 0
VPS29-204ENST00000548259 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms