RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 IST1P53990 364 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 PRRX1P54821 245 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 ABCE1P61221 599 aaKnown RBP3.09□□□□□ -1.91
CD44-217ENST00000525348 UBE2HP62256 183 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 ZNF273Q14593 569 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 SIX1Q15475 284 aaPredicted RBP3.09□□□□□ -1.91
CD44-217ENST00000525348 RNF212Q495C1 297 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 C1orf141Q5JVX7 400 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 ANKRD20A2Q5SQ80 823 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 ANKRD20A1Q5TYW2 823 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 PRMT9Q6P2P2 845 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 REG3GQ6UW15 175 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 RTL4Q6ZR62 310 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 MSANTD1Q6ZTZ1 278 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 ABI3BPQ7Z7G0 1075 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 PRUNE1Q86TP1 453 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 AMIGO1Q86WK6 493 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 RNF130Q86XS8 419 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 MMAAQ8IVH4 418 aaKnown RBP3.09□□□□□ -1.91
CD44-217ENST00000525348 CDKL3Q8IVW4 592 aaPredicted RBP3.09□□□□□ -1.91
CD44-217ENST00000525348 ZC3H3Q8IXZ2 948 aaKnown RBP3.09□□□□□ -1.91
CD44-217ENST00000525348 RTL3Q8N8U3 475 aaKnown RBP3.09□□□□□ -1.91
CD44-217ENST00000525348 SNX31Q8N9S9 440 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 SUMF1Q8NBK3 374 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 CNNM3Q8NE01 707 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 OR52N1Q8NH53 320 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 FNDC8Q8TC99 324 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 UBLCP1Q8WVY7 318 aaPredicted RBP3.09□□□□□ -1.91
CD44-217ENST00000525348 FAM122AQ96E09 287 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 CHMP6Q96FZ7 201 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 DNAJC1Q96KC8 554 aaKnown RBP3.09□□□□□ -1.91
CD44-217ENST00000525348 LURAP1Q96LR2 239 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 OLFM3Q96PB7 478 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 SPXQ9BT56 116 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 BBS2Q9BXC9 721 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 TBC1D10AQ9BXI6 508 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 POTEKPQ9BYX7 375 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 OCR1Q9BZK8 76 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 POLR1EQ9GZS1 481 aaKnown RBP3.09□□□□□ -1.91
CD44-217ENST00000525348 DPEP3Q9H4B8 488 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 MRPL47Q9HD33 250 aaKnown RBP3.09□□□□□ -1.91
CD44-217ENST00000525348 RAB9BQ9NP90 201 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 FAM114A2Q9NRY5 505 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 SLC35D1Q9NTN3 355 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 DNAJB9Q9UBS3 223 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 MAD2L2Q9UI95 211 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 SPATA2Q9UM82 520 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 COLEC10Q9Y6Z7 277 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 PRRC2AP48634 2157 aaKnown RBP3.09□□□□□ -1.91
CD44-217ENST00000525348 GRIN2DO15399 1336 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 NRCAMQ92823 1304 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 KIDINS220Q9ULH0 1771 aa3.09□□□□□ -1.91
CD44-217ENST00000525348 PLEKHH1Q9ULM0 1364 aa3.09□□□□□ -1.92
CD44-217ENST00000525348 NPHP4O75161 1426 aaPredicted RBP3.09□□□□□ -1.92
CD44-217ENST00000525348 NUP153P49790 1475 aaKnown RBP3.09□□□□□ -1.92
CD44-217ENST00000525348 ABCC1P33527 1531 aa3.09□□□□□ -1.92
CD44-217ENST00000525348 TAF1LQ8IZX4 1826 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 WNK3Q9BYP7 1800 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 A0A0U1RQK1 487 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 LOC100506127A0A0U1RQW1 187 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 PVALEFA0A1B0GWK0 134 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 ZNF320A2RRD8 509 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 MFSD2BA6NFX1 497 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 TMEM210A6NLX4 147 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 IQCF5A8MTL0 148 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 E9PBE3 544 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 H0YJX3 145 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 CCDC188H7C350 402 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 hCG_2039718K7EN88 272 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 RASGRF2O14827 1237 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 PFDN6O15212 129 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 ALOX15BO15296 676 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 EIF3HO15372 352 aaKnown RBP eCLIP3.08□□□□□ -1.92
CD44-217ENST00000525348 SIGLEC5O15389 551 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 MLNRO43193 412 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 ZNF749O43361 778 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 ZNF354AO60765 605 aaPredicted RBP3.08□□□□□ -1.92
CD44-217ENST00000525348 BCAS2O75934 225 aaPredicted RBP3.08□□□□□ -1.92
CD44-217ENST00000525348 MYO1DO94832 1006 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 ATP6V1G2O95670 118 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 PTBP3O95758 552 aaKnown RBP3.08□□□□□ -1.92
CD44-217ENST00000525348 OTCP00480 354 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 IGKV3-15P01624 115 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 HBQ1P09105 142 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 CLUP10909 449 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 AHCYP23526 432 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 PSMA2P25787 234 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 NMT1P30419 496 aaKnown RBP3.08□□□□□ -1.92
CD44-217ENST00000525348 PKLRP30613 574 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 CTNNB1P35222 781 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 RCVRNP35243 200 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 NUDT1P36639 197 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 KIR3DL2P43630 455 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 KRT6CP48668 564 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 SPCS3P61009 180 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 ERVK-16P61578 105 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 MRPS25P82663 173 aaKnown RBP3.08□□□□□ -1.92
CD44-217ENST00000525348 ELP6Q0PNE2 266 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 SCRN3Q0VDG4 424 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 BFSP1Q12934 665 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms