RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 NR4A3Q92570 626 aa9.5□□□□□ -0.89
MCF2-209ENST00000520602 NELL2Q99435 816 aa9.5□□□□□ -0.89
MCF2-209ENST00000520602 MAP3K3Q99759 626 aa9.5□□□□□ -0.89
MCF2-209ENST00000520602 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.5□□□□□ -0.89
MCF2-209ENST00000520602 MMP17Q9ULZ9 603 aa9.5□□□□□ -0.89
MCF2-209ENST00000520602 N6AMT1Q9Y5N5 214 aa9.5□□□□□ -0.89
MCF2-209ENST00000520602 IGKV1-8A0A0C4DH67 115 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 ZAR1LA6NP61 321 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 FGF17O60258 216 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 OR2B3O76000 313 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 ZNF3P17036 446 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 AHCYP23526 432 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 IDUAP35475 653 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 HNRNPFP52597 415 aaKnown RBP9.49□□□□□ -0.89
MCF2-209ENST00000520602 TMEM64Q6YI46 380 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 PRSS41Q7RTY9 318 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 PAQR7Q86WK9 346 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 ZNF619Q8N2I2 560 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 ZNF433Q8N7K0 673 aaPredicted RBP9.49□□□□□ -0.89
MCF2-209ENST00000520602 DTX3Q8N9I9 347 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 TMEM239Q8WW34 195 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 TANKQ92844 425 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 ERMAPQ96PL5 475 aaPredicted RBP9.49□□□□□ -0.89
MCF2-209ENST00000520602 TM9SF2Q99805 663 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 NDEL1Q9GZM8 345 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 PALMDQ9NP74 551 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 IKZF2Q9UKS7 526 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 ERVK-19Q9WJR5 959 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 RBMX2Q9Y388 322 aaKnown RBP9.49□□□□□ -0.89
MCF2-209ENST00000520602 A0A1W2PQF6 199 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 A0A1W2PRQ8 180 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 CD8B2A6NJW9 211 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 C2CD4DB7Z1M9 353 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 TNFRSF10CO14798 259 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 PRODHO43272 600 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 UBXN7O94888 489 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 CD8BP10966 210 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 ST6GAL1P15907 406 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 TMEM44Q2T9K0 475 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 C1orf189Q5VU69 101 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 SLX4IPQ5VYV7 408 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 CCDC71Q8IV32 467 aaPredicted RBP9.49□□□□□ -0.89
MCF2-209ENST00000520602 PHF21AQ96BD5 680 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 SLC25A36Q96CQ1 311 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 C11orf24Q96F05 449 aaPredicted RBP9.49□□□□□ -0.89
MCF2-209ENST00000520602 MRPL48Q96GC5 212 aaKnown RBP9.49□□□□□ -0.89
MCF2-209ENST00000520602 BCL7BQ9BQE9 202 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 FAIMQ9NVQ4 179 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 TAS2R7Q9NYW3 318 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 NOTCH4Q99466 2003 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 A0A1W2PPK0 400 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 CCDC182A6NF36 153 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 PEX12O00623 359 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 PRKNO60260 465 aaPredicted RBP9.49□□□□□ -0.89
MCF2-209ENST00000520602 HLA-DPB1P04440 258 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 GYPBP06028 91 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 IL12BP29460 328 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 SDC2P34741 201 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 DHPSP49366 369 aaPredicted RBP9.49□□□□□ -0.89
MCF2-209ENST00000520602 LSM11P83369 360 aaKnown RBP eCLIP9.49□□□□□ -0.89
MCF2-209ENST00000520602 HTR4Q13639 388 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 VN1R4Q7Z5H5 301 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 HSPA12BQ96MM6 686 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 NDC1Q9BTX1 674 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 BTBD2Q9BX70 525 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 MED20Q9H944 212 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.49□□□□□ -0.89
MCF2-209ENST00000520602 STUB1Q9UNE7 303 aa9.49□□□□□ -0.89
MCF2-209ENST00000520602 EXOSC1Q9Y3B2 195 aaKnown RBP9.49□□□□□ -0.89
MCF2-209ENST00000520602 TRAV27A0A087WT01 109 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 FUOMA2VDF0 154 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 H3BSH0 61 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 FFAR1O14842 300 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 P2RX6O15547 441 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 PIP5K1CO60331 668 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 CELA2BP08218 269 aaPredicted RBP9.48□□□□□ -0.89
MCF2-209ENST00000520602 NAA10P41227 235 aaPredicted RBP9.48□□□□□ -0.89
MCF2-209ENST00000520602 STAT5AP42229 794 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 SCN1BQ07699 218 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 TSPAN31Q12999 210 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 OR1Q1Q15612 314 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 DECR1Q16698 335 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 NIPAL1Q6NVV3 410 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 KRT74Q7RTS7 529 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 JAZF1Q86VZ6 243 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 OR4K13Q8NH42 304 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 OR52D1Q9H346 318 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 CHURC1-FNTBB4DL54 471 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 SOX30O94993 753 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 SSTR4P31391 388 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 CSNK1EP49674 416 aaKnown RBP9.48□□□□□ -0.89
MCF2-209ENST00000520602 WNT4P56705 351 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 RAB15P59190 212 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 ARHGAP40Q5TG30 622 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 GDF7Q7Z4P5 450 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 BTLAQ7Z6A9 289 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 ACBD7Q8N6N7 88 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 OR4D11Q8NGI4 311 aa9.48□□□□□ -0.89
MCF2-209ENST00000520602 APH1BQ8WW43 257 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms