RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 DCAF16Q9NXF7 216 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 CNOT2Q9NZN8 540 aaKnown RBP6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 ING1Q9UK53 422 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 ENTPD4Q9Y227 616 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 AHDC1Q5TGY3 1603 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 CFAP54Q96N23 3096 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 A0A087WV48 116 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 SGK494L7N484 410 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 SLC25A12O75746 678 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 WDPCPO95876 746 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 BCHEP06276 602 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 ANXA4P09525 319 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 EPXP11678 715 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 NME1P15531 152 aaKnown RBP6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 PAICSP22234 425 aaKnown RBP6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 SLC6A11P48066 632 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 AP1S2P56377 157 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 CDK6Q00534 326 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 IRF8Q02556 426 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 CHIT1Q13231 466 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 STPG1Q5TH74 334 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 RAB12Q6IQ22 244 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 SSX9Q7RTT3 188 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 SERINC5Q86VE9 423 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 LRP11Q86VZ4 500 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 RTL3Q8N8U3 475 aaKnown RBP6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 OR51L1Q8NGJ5 315 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 ZNF671Q8TAW3 534 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 DVL3Q92997 716 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 EID2BQ96D98 161 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 DERL3Q96Q80 235 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 NRTNQ99748 197 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 PDCD10Q9BUL8 212 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 ADGRE3Q9BY15 652 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 TM6SF2Q9BZW4 377 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 AP5M1Q9H0R1 490 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 SLITRK2Q9H156 845 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 RSPH9Q9H1X1 276 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 MTG2Q9H4K7 406 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 NT5DC2Q9H857 520 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 DDX31Q9H8H2 851 aaKnown RBP6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 PCDHB9Q9Y5E1 797 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 PCDHB11Q9Y5F2 797 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 CACNA1IQ9P0X4 2223 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 PLXNA1Q9UIW2 1896 aa6.81□□□□□ -1.32
LIMCH1-207ENST00000508466 IGKV6-21A0A0C4DH24 114 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 A0A1B0GV50 99 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 IFNW1P05000 195 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 CSN2P05814 226 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 GYPBP06028 91 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 HOXB1P14653 301 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 NTSP30990 170 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 MTNR1AP48039 350 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 GIPRP48546 466 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 RPIAP49247 311 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 PRKAG1P54619 331 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 DEFA6Q01524 100 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 SCAPQ12770 1279 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 PRSS53Q2L4Q9 553 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 ODF4Q2M2E3 257 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 EIF2S3LQ2VIR3 472 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 LINC00303Q3SY05 128 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 PLEKHN1Q494U1 663 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 ZNF311Q5JNZ3 666 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 DCST1Q5T197 706 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 ZDHHC20Q5W0Z9 365 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 ADAM5Q6NVV9 412 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 ZNF836Q6ZNA1 936 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 FGD2Q7Z6J4 655 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 DDX53Q86TM3 631 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 PPP1R3BQ86XI6 285 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 OR10R2Q8NGX6 335 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 OR52I2Q8NH67 350 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 AKR7LQ8NHP1 331 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 DOK4Q8TEW6 326 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 C14orf79Q96F83 325 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 TGM7Q96PF1 710 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 GPR174Q9BXC1 333 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 TEX12Q9BXU0 123 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 ABCG4Q9H172 646 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 SMOC1Q9H4F8 434 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 SDHAF3Q9NRP4 125 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 GLS2Q9UI32 602 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 NUBP2Q9Y5Y2 271 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 A0A0G2JN53 185 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 hCG_1809904A0A1W2PP81 198 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 A0A1W2PR64 198 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 A0A1W2PRV1 198 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 MGAT4DA6NG13 374 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 PIRO00625 290 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 PGRMC2O15173 223 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 FADS1O60427 444 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 GPR32O75388 356 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 CDC123O75794 336 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 HPP00738 406 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 HLA-DQB1P01920 261 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 OSMP13725 252 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 NOS3P29474 1203 aa6.8□□□□□ -1.32
LIMCH1-207ENST00000508466 CCND3P30281 292 aaPredicted RBP6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms