RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 GFYI3L273 518 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 GTPBP1O00178 669 aaKnown RBP3.56□□□□□ -1.84
USP54-217ENST00000498213 ZBTB14O43829 449 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 GPRIN2O60269 458 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 HCN1O60741 890 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 CTSVO60911 334 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 NDUFS3O75489 264 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 SLC25A12O75746 678 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 IGHG3P01860 377 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 PTMAP06454 111 aaKnown RBP3.56□□□□□ -1.84
USP54-217ENST00000498213 C8GP07360 202 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 TPBGLP0DKB5 382 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 MPC1LP0DKB6 136 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 MLNP12872 115 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 SRD5A1P18405 259 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 PSMB4P28070 264 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 CCR7P32248 378 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 RPA3P35244 121 aaPredicted RBP3.56□□□□□ -1.84
USP54-217ENST00000498213 AHRP35869 848 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 GJC1P36383 396 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 ARFIP1P53367 373 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 AP1S2P56377 157 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 VSX2P58304 361 aaPredicted RBP3.56□□□□□ -1.84
USP54-217ENST00000498213 DYNLT1P63172 113 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 SORDQ00796 357 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 ZNF33BQ06732 778 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 HSPA14Q0VDF9 509 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 TBX2Q13207 712 aaPredicted RBP3.56□□□□□ -1.84
USP54-217ENST00000498213 VEZF1Q14119 521 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 GRB7Q14451 532 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 SPARCL1Q14515 664 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 OR1C1Q15619 314 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 PHKG1Q16816 387 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 TBRG1Q3YBR2 411 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 PTRHD1Q6GMV3 140 aaKnown RBP3.56□□□□□ -1.84
USP54-217ENST00000498213 PGBD2Q6P3X8 592 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 AAGABQ6PD74 315 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 RINLQ6ZS11 566 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 SHISA6Q6ZSJ9 500 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 SLC16A12Q6ZSM3 486 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 ABHD13Q7L211 337 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 GALNT7Q86SF2 657 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 SLC22A16Q86VW1 577 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 RPS19BP1Q86WX3 136 aaKnown RBP3.56□□□□□ -1.84
USP54-217ENST00000498213 GPSM1Q86YR5 675 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 TMEM139Q8IV31 216 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 VSTM4Q8IW00 320 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 PIANPQ8IYJ0 282 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 CADM3Q8N126 398 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 RNF10Q8N5U6 811 aaKnown RBP3.56□□□□□ -1.84
USP54-217ENST00000498213 CLDN19Q8N6F1 224 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 AMER3Q8N944 861 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 OR13C4Q8NGS5 318 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 OR13J1Q8NGT2 312 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 SLC22A8Q8TCC7 542 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 ELP5Q8TE02 316 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 TBC1D20Q96BZ9 403 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 DNAJC1Q96KC8 554 aaKnown RBP3.56□□□□□ -1.84
USP54-217ENST00000498213 C10orf90Q96M02 699 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 PPM1MQ96MI6 270 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 ZFP3Q96NJ6 502 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 CYTH2Q99418 400 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 NDNQ99608 321 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 CCL19Q99731 98 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 PIP5K1AQ99755 562 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 PKP2Q99959 881 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 NAT9Q9BTE0 207 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 DPH7Q9BTV6 452 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 KIFC1Q9BW19 673 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 NPLQ9BXD5 320 aaPredicted RBP3.56□□□□□ -1.84
USP54-217ENST00000498213 CAPS2Q9BXY5 557 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 REG4Q9BYZ8 158 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 ATG10Q9H0Y0 220 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 P2RY12Q9H244 342 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 ANKHQ9HCJ1 492 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 HHATLQ9HCP6 504 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 PAK5Q9P286 719 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 CTSFQ9UBX1 484 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 ZNF629Q9UEG4 869 aaPredicted RBP3.56□□□□□ -1.84
USP54-217ENST00000498213 BAG5Q9UL15 447 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 CORO1CQ9ULV4 474 aaPredicted RBP3.56□□□□□ -1.84
USP54-217ENST00000498213 TDRKHQ9Y2W6 561 aaKnown RBP3.56□□□□□ -1.84
USP54-217ENST00000498213 YARS2Q9Y2Z4 477 aaKnown RBP3.56□□□□□ -1.84
USP54-217ENST00000498213 MAD1L1Q9Y6D9 718 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 TENM3Q9P273 2699 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 A0A1B0GTH9 108 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 A0A1W2PPV9 198 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 CCDC189A1A4V9 331 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 CCDC162PA2VCL2 907 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 PABPN1LA6NDY0 278 aaKnown RBP3.55□□□□□ -1.84
USP54-217ENST00000498213 TUBAL3A6NHL2 446 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 HSPB2A8KAH6 182 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 H0YGG7 62 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 GOLGA8TH3BQL2 631 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 SYT5O00445 386 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 CDC40O60508 579 aaKnown RBP eCLIP3.55□□□□□ -1.84
USP54-217ENST00000498213 AVILO75366 819 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 SKAP2O75563 359 aaPredicted RBP3.55□□□□□ -1.84
USP54-217ENST00000498213 TNFRSF6BO95407 300 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 GOT2P00505 430 aaKnown RBP3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms