RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 TFAP2CQ92754 450 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 TP53INP1Q96A56 240 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 TGIF2Q9GZN2 237 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 SMURF2Q9HAU4 748 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 LYVE1Q9Y5Y7 322 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 NSG1A0A0A6YYJ2 146 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 MYOCOSA0A1B0GUC4 107 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 UNC119BA6NIH7 251 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 TRIM3O75382 744 aaPredicted RBP7.78□□□□□ -1.16
USP54-215ENST00000497106 MT-CO3P00414 261 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 NR2C1P13056 603 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 SDHBP21912 280 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 CD82P27701 267 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 RYKP34925 604 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 CAPZA2P47755 286 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 VLDLRP98155 873 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 CBFBQ13951 182 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 IQCCQ4KMZ1 466 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 WBP2NLQ6ICG8 309 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 HMBOX1Q6NT76 420 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 HDDC2Q7Z4H3 204 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 CPEB2Q7Z5Q1 589 aaKnown RBP7.78□□□□□ -1.16
USP54-215ENST00000497106 OR4K5Q8NGD3 323 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 FAM110BQ8TC76 370 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 SOX17Q9H6I2 414 aaPredicted RBP7.78□□□□□ -1.16
USP54-215ENST00000497106 NDUFAF4Q9P032 175 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 PPP4R1LQ9P1A2 415 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 PAIP2BQ9ULR5 123 aaKnown RBP7.78□□□□□ -1.16
USP54-215ENST00000497106 EXO1Q9UQ84 846 aaKnown RBP7.78□□□□□ -1.16
USP54-215ENST00000497106 TRBV11-1A0A0K0K1C0 115 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 SH3D21A4FU49 640 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 AGAP5A6NIR3 686 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 MEN1O00255 615 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 NAGAP17050 411 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 MSX1P28360 303 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 RBM34P42696 430 aaKnown RBP7.78□□□□□ -1.16
USP54-215ENST00000497106 BTBD16Q32M84 506 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 SLC36A3Q495N2 470 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 SLC15A4Q8N697 577 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 RCBTB1Q8NDN9 531 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 ZHX1-C8orf76Q96EF9 292 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 LRFN5Q96NI6 719 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 ITPAQ9BY32 194 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 NMNAT1Q9HAN9 279 aaPredicted RBP7.78□□□□□ -1.16
USP54-215ENST00000497106 ERGIC3Q9Y282 383 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 A0A1W2PRQ8 180 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 SAGE2PA6NJ88 616 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 M0R3H8 397 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 HCRTR2O43614 444 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 IFI30P13284 250 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 ZNF26P17031 533 aaPredicted RBP7.77□□□□□ -1.17
USP54-215ENST00000497106 SSTR4P31391 388 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 DGCR6Q14129 220 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 MPEG1Q2M385 716 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 ANKDD1AQ495B1 522 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 HEPHL1Q6MZM0 1159 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 GALNT10Q86SR1 603 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 JAZF1Q86VZ6 243 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 VRK2Q86Y07 508 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 IL22RA1Q8N6P7 574 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 GRHL3Q8TE85 626 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 ASB15Q8WXK1 588 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 SGTBQ96EQ0 304 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 ARHGDIGQ99819 225 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 RXFP3Q9NSD7 469 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 KCNK2O95069 426 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 AHSA1O95433 338 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 IL33O95760 270 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 CHRM4P08173 479 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 CCDC159P0C7I6 412 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 CSF2RBP32927 897 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 GUCA1AP43080 201 aaPredicted RBP7.77□□□□□ -1.17
USP54-215ENST00000497106 PNLIPRP2P54317 469 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.77□□□□□ -1.17
USP54-215ENST00000497106 MRPL2Q5T653 305 aaKnown RBP7.77□□□□□ -1.17
USP54-215ENST00000497106 ZNF836Q6ZNA1 936 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 NUP54Q7Z3B4 507 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 PARP8Q8N3A8 854 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 OR1N1Q8NGS0 311 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 FEVQ99581 238 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 ASPNQ9BXN1 380 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 BRWD1Q9NSI6 2320 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 PATE3B3GLJ2 98 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 CSO75390 466 aaKnown RBP7.77□□□□□ -1.17
USP54-215ENST00000497106 SNAP29O95721 258 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 SLC26A5P58743 744 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 CXCR4P61073 352 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 FUT7Q11130 342 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 PDSS1Q5T2R2 415 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 SLC27A4Q6P1M0 643 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 PRSS41Q7RTY9 318 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 GID4Q8IVV7 300 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 C17orf47Q8NEP4 570 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 OR8J1Q8NGP2 316 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 CRELD1Q96HD1 420 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 DGCR6LQ9BY27 220 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 CHST8Q9H2A9 424 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 NECTIN3Q9NQS3 549 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 PCDHGB7Q9Y5F8 929 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 SLCO1B1Q9Y6L6 691 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms