RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 TCEAL2Q9H3H9 227 aaPredicted RBP12.4□□□□□ -0.43
HMGN1-216ENST00000486741 KIR3DX1Q9H7L2 352 aa12.4□□□□□ -0.43
HMGN1-216ENST00000486741 TRIM36Q9NQ86 728 aa12.4□□□□□ -0.43
HMGN1-216ENST00000486741 TMEFF2Q9UIK5 374 aaPredicted RBP12.4□□□□□ -0.43
HMGN1-216ENST00000486741 HK1P19367 917 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 SSTR4P31391 388 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 SLC6A6P31641 620 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 CAV3P56539 151 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 OR2B6P58173 313 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 NKAIN2Q5VXU1 208 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 SYCE2Q6PIF2 218 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 RHOXF1Q8NHV9 184 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 CNRIP1Q96F85 164 aaPredicted RBP12.39□□□□□ -0.43
HMGN1-216ENST00000486741 TAS2R7Q9NYW3 318 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 ADAM29Q9UKF5 820 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 AP1M2Q9Y6Q5 423 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 UNC13CQ8NB66 2214 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 SH3D21A4FU49 640 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 APBB3O95704 486 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 GBX2P52951 348 aaPredicted RBP12.39□□□□□ -0.43
HMGN1-216ENST00000486741 HNRNPKP61978 463 aaKnown RBP eCLIP12.39□□□□□ -0.43
HMGN1-216ENST00000486741 TRA2BP62995 288 aaKnown RBP12.39□□□□□ -0.43
HMGN1-216ENST00000486741 LPAL2Q16609 132 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 TMEM44Q2T9K0 475 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 TCTN3Q6NUS6 607 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 CRIPAKQ8N1N5 446 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 ACBD7Q8N6N7 88 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 MOSPD2Q8NHP6 518 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 DDX31Q9H8H2 851 aaKnown RBP12.39□□□□□ -0.43
HMGN1-216ENST00000486741 CENPMQ9NSP4 180 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 PSORS1C1Q9UIG5 152 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 PCYT1BQ9Y5K3 369 aaPredicted RBP12.39□□□□□ -0.43
HMGN1-216ENST00000486741 A0A1B0GVC2 190 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 A6NIN4 97 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 NOTOA8MTQ0 251 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 KHDRBS3O75525 346 aaKnown RBP12.39□□□□□ -0.43
HMGN1-216ENST00000486741 PAPLNO95428 1278 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 EIF2DP41214 584 aaKnown RBP12.39□□□□□ -0.43
HMGN1-216ENST00000486741 SLC35A2P78381 396 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 GFOD2Q3B7J2 385 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 LCN1P1Q5VSP4 162 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 ZNF676Q8N7Q3 588 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 TMEM239Q8WW34 195 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 ZMYND19Q96E35 227 aaPredicted RBP12.39□□□□□ -0.43
HMGN1-216ENST00000486741 PITHD1Q9GZP4 211 aaPredicted RBP12.39□□□□□ -0.43
HMGN1-216ENST00000486741 RPRD1BQ9NQG5 326 aaKnown RBP12.39□□□□□ -0.43
HMGN1-216ENST00000486741 GPN3Q9UHW5 284 aaPredicted RBP12.39□□□□□ -0.43
HMGN1-216ENST00000486741 ENTPD2Q9Y5L3 495 aa12.39□□□□□ -0.43
HMGN1-216ENST00000486741 ZNF701M0R085 212 aaPredicted RBP12.38□□□□□ -0.43
HMGN1-216ENST00000486741 SSNA1O43805 119 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 SEC14L2O76054 403 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 PLGP00747 810 aaPredicted RBP12.38□□□□□ -0.43
HMGN1-216ENST00000486741 MMP11P24347 488 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 CD6P30203 668 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 EIF1AXP47813 144 aaKnown RBP12.38□□□□□ -0.43
HMGN1-216ENST00000486741 BCAP31P51572 246 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 GP2P55259 537 aaKnown RBP12.38□□□□□ -0.43
HMGN1-216ENST00000486741 OR12D2P58182 307 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 ALG11Q2TAA5 492 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 NDUFAF6Q330K2 333 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 INAVAQ3KP66 663 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 RASGRP3Q8IV61 690 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 LINC00615Q96LM1 132 aaPredicted RBP12.38□□□□□ -0.43
HMGN1-216ENST00000486741 TEX101Q9BY14 249 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 CD93Q9NPY3 652 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 SLAMF7Q9NQ25 335 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 SCN5AQ14524 2016 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 MAN2B1O00754 1011 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 TNFRSF17Q02223 184 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 OR10H5Q8NGA6 315 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 ACOT11Q8WXI4 607 aaPredicted RBP12.38□□□□□ -0.43
HMGN1-216ENST00000486741 SHDQ96IW2 340 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 BEX2Q9BXY8 128 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 SLC6A20Q9NP91 592 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 MRPL39Q9NYK5 338 aaKnown RBP12.38□□□□□ -0.43
HMGN1-216ENST00000486741 AKAP7Q9P0M2 348 aaPredicted RBP12.38□□□□□ -0.43
HMGN1-216ENST00000486741 DHCR7Q9UBM7 475 aaKnown RBP12.38□□□□□ -0.43
HMGN1-216ENST00000486741 EXOSC1Q9Y3B2 195 aaKnown RBP12.38□□□□□ -0.43
HMGN1-216ENST00000486741 KCNE3Q9Y6H6 103 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 SPAG17Q6Q759 2223 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 KIR2DS5A0A0G2JLQ3 304 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 A0A0G2JNG1 304 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 TSPAN11A1L157 253 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 KIR2DS3K7RE56 304 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 COL9A1P20849 921 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 PRPH2P23942 346 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 CD38P28907 300 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 CCKBRP32239 447 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 ZFP36L2P47974 494 aaKnown RBP12.38□□□□□ -0.43
HMGN1-216ENST00000486741 E2F2Q14209 437 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 KIR2DS5Q14953 304 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 NDUFA5Q16718 116 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 OR5M10Q6IEU7 315 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 ZNF793Q6ZN11 406 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 NKAIN4Q8IVV8 208 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 SLC44A3Q8N4M1 653 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 TTYH2Q9BSA4 534 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 ELL3Q9HB65 397 aaPredicted RBP12.38□□□□□ -0.43
HMGN1-216ENST00000486741 BEX1Q9HBH7 125 aa12.38□□□□□ -0.43
HMGN1-216ENST00000486741 SMURF1Q9HCE7 757 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms