RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 MRPL17Q9NRX2 175 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 MRM2Q9UI43 246 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 FAM96BQ9Y3D0 163 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 HYOU1Q9Y4L1 999 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 KLK4Q9Y5K2 254 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 KPTNQ9Y664 436 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 URGCP-MRPS24S4R325 110 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 STK36Q9NRP7 1315 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 LRPPRCP42704 1394 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 PPIAL4EA0A075B759 164 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 LOC105371242A0A075B767 164 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 A0A1B0GVL5 298 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 C1orf226A1L170 272 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 TMEM213A2RRL7 107 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 SMCO3A2RU48 225 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 EFCAB10A6NFE3 127 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 A8MU76 341 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 HEPACAM2A8MVW5 462 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 ZNF99A8MXY4 864 aaPredicted RBP4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 HHLA1C9JL84 531 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 RAB29O14966 203 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 ZSCAN12O43309 604 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 OR1F1O43749 312 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 OR10H2O60403 315 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 GOT2P00505 430 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 CHRNGP07510 517 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 KRT16P08779 473 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 ALDOCP09972 364 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 CCDC166P0CW27 439 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 PPIAL4FP0DN26 164 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 ACADSP16219 412 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 NCK1P16333 377 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 MMP11P24347 488 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 STOMP27105 288 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 TEAD1P28347 426 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 BDKRB2P30411 391 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 CEACAM3P40198 252 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 ID1P41134 155 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 MAGEA2P43356 314 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 CDX1P47902 265 aaPredicted RBP4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 MRPL19P49406 292 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 COMPP49747 757 aaPredicted RBP4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 NAPAP54920 295 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 MAGOHP61326 146 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 DSC1Q08554 894 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 RBBP7Q16576 425 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 NDUFAF6Q330K2 333 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 DCAF4L1Q3SXM0 396 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 AGKQ53H12 422 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 ALG10Q5BKT4 473 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 CMPK2Q5EBM0 449 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 ALG10BQ5I7T1 473 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 GFI1BQ5VTD9 330 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 ADNP2Q6IQ32 1131 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 PRR27Q6MZM9 219 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 CD164L2Q6UWJ8 174 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 PLXDC2Q6UX71 529 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 QSOX2Q6ZRP7 698 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 MRPL21Q7Z2W9 205 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 ZNF329Q86UD4 541 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 TGIF2LXQ8IUE1 241 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 CBWD2Q8IUF1 395 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 ZBED8Q8IZ13 594 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 ZNF34Q8IZ26 560 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 TMEM123Q8N131 208 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 SCAIQ8N9R8 606 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 CCDC197Q8NCU1 140 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 FBXO36Q8NEA4 188 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 OR9G4Q8NGQ1 327 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 OR1L4Q8NGR5 311 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 GIPC3Q8TF64 312 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 UBTD2Q8WUN7 234 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC35F5Q8WV83 523 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 SORCS1Q8WY21 1168 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 NR4A3Q92570 626 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 P3H4Q92791 437 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 P2RX5Q93086 422 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 PSMG2Q969U7 264 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 PACRGQ96M98 296 aaPredicted RBP4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 ZNF578Q96N58 590 aaPredicted RBP4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 NAPGQ99747 312 aaPredicted RBP4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 RBM24Q9BX46 236 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 POLDIP3Q9BY77 421 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 GBA3Q9H227 469 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 OR51B5Q9H339 312 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 SNX25Q9H3E2 840 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 ZDHHC6Q9H6R6 413 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 UBTD1Q9HAC8 227 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 BPIFA1Q9NP55 256 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 RAB9BQ9NP90 201 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 GPR173Q9NS66 373 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 UFSP2Q9NUQ7 469 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 CD274Q9NZQ7 290 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 TXNDC16Q9P2K2 825 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 CIDEBQ9UHD4 219 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 FBXO4Q9UKT5 387 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 IKZF3Q9UKT9 509 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 ICAM5Q9UMF0 924 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 TNNQ9UQP3 1299 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms