RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 EXOC3L1Q86VI1 746 aa15.82■□□□□ 0.12
COL7A1-206ENST00000466591 TWIST2Q8WVJ9 160 aa15.82■□□□□ 0.12
COL7A1-206ENST00000466591 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.82■□□□□ 0.12
COL7A1-206ENST00000466591 G6PC3Q9BUM1 346 aa15.82■□□□□ 0.12
COL7A1-206ENST00000466591 GATA5Q9BWX5 397 aaPredicted RBP15.82■□□□□ 0.12
COL7A1-206ENST00000466591 NEUROD4Q9HD90 331 aa15.82■□□□□ 0.12
COL7A1-206ENST00000466591 TNFRSF12AQ9NP84 129 aa15.82■□□□□ 0.12
COL7A1-206ENST00000466591 BAIAP2L1Q9UHR4 511 aa15.82■□□□□ 0.12
COL7A1-206ENST00000466591 PROCRQ9UNN8 238 aa15.82■□□□□ 0.12
COL7A1-206ENST00000466591 AP4B1Q9Y6B7 739 aa15.82■□□□□ 0.12
COL7A1-206ENST00000466591 DOCK7Q96N67 2140 aa15.82■□□□□ 0.12
COL7A1-206ENST00000466591 FAM221AA4D161 298 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 EIF1AYO14602 144 aaKnown RBP15.81■□□□□ 0.12
COL7A1-206ENST00000466591 EMC8O43402 210 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 HCRTR2O43614 444 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 TNFRSF21O75509 655 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 SYNGR4O95473 234 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 SDC1P18827 310 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 ATP6V1C1P21283 382 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 SERPINB4P48594 390 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 CTBP2P56545 445 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 CLDN15P56746 228 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 B3GALT5-AS1P59052 145 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 PCLAFQ15004 111 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 DEFB113Q30KQ7 82 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 FIGNL1Q6PIW4 674 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 RIBC1Q8N443 379 aaPredicted RBP15.81■□□□□ 0.12
COL7A1-206ENST00000466591 GATSQ8NAP1 163 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 LRRN4CLQ8ND94 238 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 PPP1R14CQ8TAE6 165 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.81■□□□□ 0.12
COL7A1-206ENST00000466591 FIG4Q92562 907 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 CXXC4Q9H2H0 198 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 FANCFQ9NPI8 374 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 KLHL28Q9NXS3 571 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 EMC9Q9Y3B6 208 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 ZNF175Q9Y473 711 aa15.81■□□□□ 0.12
COL7A1-206ENST00000466591 TNFSF12-TNFSF13A0A0A6YY99 330 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 TNFSF13O75888 250 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 PSMG1O95456 288 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 NUDT14O95848 222 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 IFI6P09912 130 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 CD79BP40259 229 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 EXOC3L2Q2M3D2 409 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 GLYR1Q49A26 553 aaPredicted RBP15.8■□□□□ 0.12
COL7A1-206ENST00000466591 ATP6AP1LQ52LC2 224 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 RFTN2Q52LD8 501 aaPredicted RBP15.8■□□□□ 0.12
COL7A1-206ENST00000466591 KANK2Q63ZY3 851 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 VWA1Q6PCB0 445 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 LRIG3Q6UXM1 1119 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 SH2D5Q6ZV89 423 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 WDR75Q8IWA0 830 aaKnown RBP15.8■□□□□ 0.12
COL7A1-206ENST00000466591 OR6Y1Q8NGX8 325 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 FNDC9Q8TBE3 224 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 RNF138Q8WVD3 245 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 MTERF3Q96E29 417 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 ZC3HAV1LQ96H79 300 aaKnown RBP15.8■□□□□ 0.12
COL7A1-206ENST00000466591 SH3YL1Q96HL8 342 aaPredicted RBP15.8■□□□□ 0.12
COL7A1-206ENST00000466591 PPP3R2Q96LZ3 170 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 PRPF18Q99633 342 aaKnown RBP15.8■□□□□ 0.12
COL7A1-206ENST00000466591 OPN3Q9H1Y3 402 aaPredicted RBP15.8■□□□□ 0.12
COL7A1-206ENST00000466591 ZCCHC3Q9NUD5 404 aaKnown RBP15.8■□□□□ 0.12
COL7A1-206ENST00000466591 ATAD3AQ9NVI7 634 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 MCTS1Q9ULC4 181 aaKnown RBP15.8■□□□□ 0.12
COL7A1-206ENST00000466591 TRAF6Q9Y4K3 522 aa15.8■□□□□ 0.12
COL7A1-206ENST00000466591 ANKHD1Q8IWZ3 2542 aaKnown RBP15.8■□□□□ 0.12
COL7A1-206ENST00000466591 AKAP9Q99996 3911 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 A0A087WZY1 265 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 SHISA8B8ZZ34 492 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 H0YC42 278 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 PIP5K1BO14986 540 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 CFLARO15519 480 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 NPHS1O60500 1241 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 SPAG7O75391 227 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 EFNA1P20827 205 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-206ENST00000466591 SUCLG1P53597 346 aaKnown RBP15.79■□□□□ 0.12
COL7A1-206ENST00000466591 TPD52P55327 224 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-206ENST00000466591 CLDN20P56880 219 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 SLC18A2Q05940 514 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 FAM27E3Q08E93 113 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 KIAA0040Q15053 153 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 PDSS1Q5T2R2 415 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 ZNF527Q8NB42 609 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 OR2T11Q8NH01 316 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 OR2W6PQ8NHA6 318 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 MBD6Q96DN6 1003 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 STARD4Q96DR4 205 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 OTUB1Q96FW1 271 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-206ENST00000466591 ZNF764Q96H86 408 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-206ENST00000466591 REXO5Q96IC2 774 aaKnown RBP15.79■□□□□ 0.12
COL7A1-206ENST00000466591 KLHL4Q9C0H6 718 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 ACSS1Q9NUB1 689 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-206ENST00000466591 PAQR5Q9NXK6 330 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-206ENST00000466591 ELOVL5Q9NYP7 299 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 C6orf203Q9P0P8 240 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-206ENST00000466591 FAF1Q9UNN5 650 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-206ENST00000466591 CCL27Q9Y4X3 112 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 DNAJC15Q9Y5T4 150 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 MED13LQ71F56 2210 aa15.79■□□□□ 0.12
COL7A1-206ENST00000466591 SPG11Q96JI7 2443 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms