RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 MCTS1Q9ULC4 181 aaKnown RBP13.85□□□□□ -0.19
SKA3-204ENST00000462482 ABCA2Q9BZC7 2435 aa13.85□□□□□ -0.19
SKA3-204ENST00000462482 A0A087WZY1 265 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 H7C1Q1 480 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 PDPK1O15530 556 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 RIPK2O43353 540 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 NDUFB5O43674 189 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 GMFGO60234 142 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 GLRA3O75311 464 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 SEC22BO75396 215 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 IFI6P09912 130 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 HPGDP15428 266 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 ME2P23368 584 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 GCAP28676 217 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 PRR5P85299 388 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 HSPB3Q12988 150 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 PDSS1Q5T2R2 415 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 SZRD1Q7Z422 152 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 TRIM46Q7Z4K8 759 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 STK32CQ86UX6 486 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 KRTAP1-3Q8IUG1 177 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 CCDC63Q8NA47 563 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 OR6K3Q8NGY3 331 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 NUDT8Q8WV74 236 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 PERPQ96FX8 193 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 METTL2AQ96IZ6 378 aaKnown RBP13.84□□□□□ -0.19
SKA3-204ENST00000462482 EQTNQ9NQ60 294 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 FLRT3Q9NZU0 649 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 TBK1Q9UHD2 729 aa13.84□□□□□ -0.19
SKA3-204ENST00000462482 MAP1AP78559 2803 aaPredicted RBP13.83□□□□□ -0.19
SKA3-204ENST00000462482 B4DXG7 233 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 SLC28A1O00337 649 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 PSMG1O95456 288 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 CGAP01215 116 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 UROSP10746 265 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 ZNF17P17021 662 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 DDX5P17844 614 aaKnown RBP13.83□□□□□ -0.2
SKA3-204ENST00000462482 CCT5P48643 541 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 ZNF41P51814 821 aaPredicted RBP13.83□□□□□ -0.2
SKA3-204ENST00000462482 PRKAG1P54619 331 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 FOXA1P55317 472 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 CCDC153Q494R4 210 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 BEX5Q5H9J7 111 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 ANKRD34AQ69YU3 496 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 GTF2IRD2BQ6EKJ0 949 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 ZYG11AQ6WRX3 759 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 PLEKHM3Q6ZWE6 761 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 GTF2IRD2Q86UP8 949 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 CDRT4Q8N9R6 151 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.83□□□□□ -0.2
SKA3-204ENST00000462482 SLC9A6Q92581 669 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 GMPPAQ96IJ6 420 aaPredicted RBP13.83□□□□□ -0.2
SKA3-204ENST00000462482 COX4I2Q96KJ9 171 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 GLRX2Q9NS18 164 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 VDAC3Q9Y277 283 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 NIPBLQ6KC79 2804 aaeCLIP13.83□□□□□ -0.2
SKA3-204ENST00000462482 ACANP16112 2415 aa13.83□□□□□ -0.2
SKA3-204ENST00000462482 IGLV3-32A0A0A0MS00 114 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 UBFD1O14562 309 aaKnown RBP13.82□□□□□ -0.2
SKA3-204ENST00000462482 SMAD7O15105 426 aaKnown RBP13.82□□□□□ -0.2
SKA3-204ENST00000462482 SIAH2O43255 324 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 RGS14O43566 566 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 LY6G6DO95868 133 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 CHEK2O96017 543 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 CCKARP32238 428 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 NR1H2P55055 460 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 PPP2R2BQ00005 443 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 SLC29A2Q14542 456 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 PRSS53Q2L4Q9 553 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 GRAMD1BQ3KR37 738 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 FRMD7Q6ZUT3 714 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 ZNF551Q7Z340 670 aaPredicted RBP13.82□□□□□ -0.2
SKA3-204ENST00000462482 MISPQ8IVT2 679 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 HOMEZQ8IX15 550 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 OR6Y1Q8NGX8 325 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 TMEM171Q8WVE6 324 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 PIK3R3Q92569 461 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 ZBTB8AQ96BR9 441 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 PPCDCQ96CD2 204 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 ZBED6CLQ96FA7 236 aaPredicted RBP13.82□□□□□ -0.2
SKA3-204ENST00000462482 REXO5Q96IC2 774 aaKnown RBP13.82□□□□□ -0.2
SKA3-204ENST00000462482 CXorf56Q9H5V9 222 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 PLSCR4Q9NRQ2 329 aa13.82□□□□□ -0.2
SKA3-204ENST00000462482 FLNAP21333 2647 aaKnown RBP13.81□□□□□ -0.2
SKA3-204ENST00000462482 GXYLT2A0PJZ3 443 aa13.81□□□□□ -0.2
SKA3-204ENST00000462482 SHISA8B8ZZ34 492 aa13.81□□□□□ -0.2
SKA3-204ENST00000462482 ALG1L2C9J202 215 aa13.81□□□□□ -0.2
SKA3-204ENST00000462482 G3V2L1 256 aa13.81□□□□□ -0.2
SKA3-204ENST00000462482 AQP8O94778 261 aa13.81□□□□□ -0.2
SKA3-204ENST00000462482 PABPC4LP0CB38 370 aaKnown RBP13.81□□□□□ -0.2
SKA3-204ENST00000462482 MANFP55145 182 aaKnown RBP13.81□□□□□ -0.2
SKA3-204ENST00000462482 DNAJB13P59910 316 aa13.81□□□□□ -0.2
SKA3-204ENST00000462482 BEND4Q6ZU67 534 aa13.81□□□□□ -0.2
SKA3-204ENST00000462482 GTPBP8Q8N3Z3 284 aaPredicted RBP13.81□□□□□ -0.2
SKA3-204ENST00000462482 CEP112Q8N8E3 955 aa13.81□□□□□ -0.2
SKA3-204ENST00000462482 NUP43Q8NFH3 380 aa13.81□□□□□ -0.2
SKA3-204ENST00000462482 OR10D3Q8NH80 312 aa13.81□□□□□ -0.2
SKA3-204ENST00000462482 CHMP6Q96FZ7 201 aa13.81□□□□□ -0.2
SKA3-204ENST00000462482 RTN4RQ9BZR6 473 aa13.81□□□□□ -0.2
SKA3-204ENST00000462482 LRTM1Q9HBL6 345 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 117.4 ms