RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 ACTRT2Q8TDY3 377 aa7.04□□□□□ -1.28
CD44-211ENST00000442151 DUSP19Q8WTR2 217 aa7.04□□□□□ -1.28
CD44-211ENST00000442151 CAVIN3Q969G5 261 aa7.04□□□□□ -1.28
CD44-211ENST00000442151 MOAP1Q96BY2 351 aa7.04□□□□□ -1.28
CD44-211ENST00000442151 EFHD2Q96C19 240 aaPredicted RBP7.04□□□□□ -1.28
CD44-211ENST00000442151 C11orf24Q96F05 449 aaPredicted RBP7.04□□□□□ -1.28
CD44-211ENST00000442151 PGM2Q96G03 612 aa7.04□□□□□ -1.28
CD44-211ENST00000442151 ZNF845Q96IR2 970 aaPredicted RBP7.04□□□□□ -1.28
CD44-211ENST00000442151 PPP3R2Q96LZ3 170 aa7.04□□□□□ -1.28
CD44-211ENST00000442151 ROPN1BQ9BZX4 212 aaPredicted RBP7.04□□□□□ -1.28
CD44-211ENST00000442151 GLIPR2Q9H4G4 154 aa7.04□□□□□ -1.28
CD44-211ENST00000442151 ROPN1Q9HAT0 212 aaPredicted RBP7.04□□□□□ -1.28
CD44-211ENST00000442151 GIN1Q9NXP7 522 aa7.04□□□□□ -1.28
CD44-211ENST00000442151 SH3BP4Q9P0V3 963 aa7.04□□□□□ -1.28
CD44-211ENST00000442151 CLCF1Q9UBD9 225 aa7.04□□□□□ -1.28
CD44-211ENST00000442151 MCTS1Q9ULC4 181 aaKnown RBP7.04□□□□□ -1.28
CD44-211ENST00000442151 EMC9Q9Y3B6 208 aa7.04□□□□□ -1.28
CD44-211ENST00000442151 SNX8Q9Y5X2 465 aa7.04□□□□□ -1.28
CD44-211ENST00000442151 ANKRD17O75179 2603 aaKnown RBP7.03□□□□□ -1.28
CD44-211ENST00000442151 A0A1W2PNV4 684 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 SCO2A0A1W2PP80 73 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 G3V2L1 256 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 C16orf97H3BN30 126 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 NDUFB5O43674 189 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 SCO2O43819 266 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 FADS1O60427 444 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 NPHS1O60500 1241 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 SMNDC1O75940 238 aaKnown RBP eCLIP7.03□□□□□ -1.28
CD44-211ENST00000442151 SNUPNO95149 360 aaKnown RBP7.03□□□□□ -1.28
CD44-211ENST00000442151 FGF4P08620 206 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 CD8BP10966 210 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 ZNF17P17021 662 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 ATP6V1C1P21283 382 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 ME2P23368 584 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 CD79BP40259 229 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 EIF1P41567 113 aaKnown RBP7.03□□□□□ -1.28
CD44-211ENST00000442151 MC3RP41968 323 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 KCNJ5P48544 419 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 STARP49675 285 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 HTR6P50406 440 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 CTBP2P56545 445 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 CORO7P57737 925 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 PSG6Q00889 435 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 DUSP2Q05923 314 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 IFFO1Q0D2I5 559 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 MAD2L1Q13257 205 aaPredicted RBP7.03□□□□□ -1.28
CD44-211ENST00000442151 MLC1Q15049 377 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 DEFB113Q30KQ7 82 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 TCHHL1Q5QJ38 904 aaPredicted RBP7.03□□□□□ -1.28
CD44-211ENST00000442151 POMZP3Q6PJE2 187 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 NPSR1Q6W5P4 371 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 MTERF4Q7Z6M4 381 aaKnown RBP7.03□□□□□ -1.28
CD44-211ENST00000442151 LUZP2Q86TE4 346 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 MMP21Q8N119 569 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 CNEP1R1Q8N9A8 125 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 NUP43Q8NFH3 380 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 LINC01560Q8TB33 94 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.03□□□□□ -1.28
CD44-211ENST00000442151 ZBTB8AQ96BR9 441 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 C1GALT1C1Q96EU7 318 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 REXO5Q96IC2 774 aaKnown RBP7.03□□□□□ -1.28
CD44-211ENST00000442151 FAM111AQ96PZ2 611 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 PIP5K1AQ99755 562 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 TACO1Q9BSH4 297 aaKnown RBP7.03□□□□□ -1.28
CD44-211ENST00000442151 TXLNGYQ9BZA5 131 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 OR10A4Q9H209 315 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 UBQLN4Q9NRR5 601 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 FBXL2Q9UKC9 423 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 PROCRQ9UNN8 238 aa7.03□□□□□ -1.28
CD44-211ENST00000442151 RPH3AQ9Y2J0 694 aaPredicted RBP7.03□□□□□ -1.28
CD44-211ENST00000442151 IGLV3-32A0A0A0MS00 114 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 A0A1B0GTL3 188 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 A0A1W2PPM1 405 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 UPK1AO00322 258 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 SCDO00767 359 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 NKX2-2O95096 273 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 UTS2O95399 124 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 PLGP00747 810 aaPredicted RBP7.02□□□□□ -1.29
CD44-211ENST00000442151 FESP07332 822 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 POU2F1P14859 743 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 KRT4P19013 534 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 KLK2P20151 261 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 TBXA2RP21731 343 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 ZNF41P51814 821 aaPredicted RBP7.02□□□□□ -1.29
CD44-211ENST00000442151 PRKAG1P54619 331 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 GAS1P54826 345 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 CLDN18P56856 261 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 SLC18A2Q05940 514 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.02□□□□□ -1.29
CD44-211ENST00000442151 SSX8Q7RTT4 187 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 LRRC75A-AS1Q8N1F1 130 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 ZIM3Q96PE6 472 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 HDHD5Q9BXW7 423 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 L2HGDHQ9H9P8 463 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 NGBQ9NPG2 151 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 GALNT8Q9NY28 637 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 MED11Q9P086 117 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 NTMQ9P121 344 aa7.02□□□□□ -1.29
CD44-211ENST00000442151 FAF1Q9UNN5 650 aaPredicted RBP7.02□□□□□ -1.29
CD44-211ENST00000442151 POLR3HQ9Y535 204 aaPredicted RBP7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms